| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1103 |
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| Symbol | soxA2 |
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| ID | 1219915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1159152 |
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| End bp | 1162163 |
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| Gene Length | 3012 bp |
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| Protein Length | 1003 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637237469 |
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| Product | sarcosine oxidase subunit alpha |
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| Protein accession | NP_519224 |
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| Protein GI | 17545822 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0428535 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGA AAGACCGTCT CGGTACGGGT GGCCGTATCA ATCGTGCGAT TCCGCTGACG
TTTACGTTCA ACGGCCGCAC GTATCAGGGT TTCCAGGGCG ACACGCTGGC GTCTGCGCTG
CTCGCGAATG GCGTGCATTT CGTCGCGCGC AGCTTCAAGT ACCACCGTCC GCGCGGGATC
ATGACGGCGG GCGTCGAGGA GCCGAACGCG GTGGTGCAGC TCGAGTCGGG CCCGTACAGC
GTGCCGAATG CGCGCGCGAC CGAGATCGAG CTATACCAGG GGCTCATCGC CACCAGCGTG
AACGCCGAAC CGTCGCTCGA AAACGATCGC TATGCGATCA GCCAGATGTT TTCGCGCTTC
CTGCCCGCCG GTTTCTACTA CAAGACCTTC ATGTGGCCGC GCAAGATGTG GCCGAAGTAC
GAAGAAAAGA TCCGCGAAGC GGCCGGCCTT GGCAAGGCGC CCGACATGCG CGACGCGGAC
CGCTACGACA AGTGTTACGC GCACTGCGAC GTGCTCGTCG TGGGTGGCGG CCCGACGGGG
CTCGCGGCCG CACACGCGGC GGCGATGGCC GGGGCGCGCG TCATCCTGGT TGAAGACCAG
CGCGAGCTTG GCGGCAGCCT GCTGTCGTGC CGCGCGGAAA TCGGCGGCAA GCCAGCGCTG
CAGTGGGTCG AGAAGATCGA AGCCCAGCTG CGCAAGCTGC CCGACGTGAG TATCCTCACG
CGCAGTACCG CGTTCGGCTA TCAGGATCAC AACCTCGTGA CCGTCACGCA GCGCCTGACG
GATCATCTGC CGATCTCGAT GCGCAAGGGC ACGCGCGAGC TGCTGTGGAA GGTCCGCGCC
AAGCGCGTCA TTCTCGCAAC GGGCGCGCAC GAGCGGCCGA TCGTGTTCGG CAACAACGAC
CTGCCGGGTG TGATGCTCGC GGGCGCCGTG TCCACGTACA TCCATCGCTT CGGCGTGCTG
CCGGGGCGTG ACGCCGTCGT GTTCACGAAC AACGACCGCG CCTACCAGAC CGCGCTCGAT
CTGAAGGCGT GCGGTGCGAA GGTCACGGTC GTCGACGCGC GCGCACCCGG CAACGGTGCG
CTGCCCGCCG TTGCGAAGCG CCAGGGCGTA ACGGTGATGC ATGGCGCGGT GATCACGGCT
GCGTCCGGCA AGTGGCGCGT GTCATCGGTC GACGTCGCGT CTTACGCGAA TGGGCAGGTG
GGCGGCAAGC AGAAGACGCT GCCGTGCGAC CTTGTCGCGA CGTCGGGCGG TTTCAGCCCG
GTGCTGCACC TGTTCGCGCA ATCGGGCGGC AAGGCCCAGT GGAACGATGA CAAGGCGTGC
TTCGTGCCGG GCAAGACCGT GCAGGCCGAG GCGAGCGTCG GCGCGGCAGC GGGTGAATTC
GCCCTTGCGC ACGCGCTGCA GCTTGCAGTG GATGCGGGGG CCGAGGCTGC ACAGGCGGCG
GGTTGCACGG CCGCGCAACG CGCTGTCGCA CCGCGGGTCG CGGAAACGGC CGAAGGCGCG
CTGCAACCGC TGTGGCTCAT CGGTAGCCGC GAGGCCGCTG CACGCGGGCC GAAGCAGTTC
GTTGACTTCC AGAATGACGT GGCGGTCACC GACATCCTGC TCGCCGCGCG CGAGGGTTTC
GAGTCGGTCG AGCACGTCAA GCGCTACACG GCGATGGGCT TCGGCACCGA TCAGGGCAAG
CTCGGCAACA TCAACGGGAT GGCGATTCTC GCCCAGGCGC TCGGCAAGTC GATTCCGGAA
ACGGGCACGA CGACGTTCCG CCCCAACTAC ACACCCGTGT CGTTCGGCAC GTTCGCGGGC
CGCGAGCTGG GCAACTTCCT CGACCCGGTC CGCAAGACCT GCATTCATGA GTGGCATGTC
GAGCACGGTG CGCTGTTCGA AGACGTCGGC AACTGGAAAC GACCCTGGTA TTTTCCGAAG
AACGGCGAAG ACCTGCATGC GGCCGTGAAG CGCGAGTGCC TGGCGGTGCG CAACGGTGTC
GGCATGCTCG ATGCGTCCAC GCTCGGCAAG ATCGACATCC AGGGCCCCGA CGCGGTGAAG
CTGCTGAACT GGGTGTACAC GAACCCGTGG GGCAAGCTCG ACGTCGGCAA GTGCCGCTAC
GGGCTGATGC TCGATGAGAA CGGGATGGTG TTCGACGACG GCGTGACCGT GCGCCTCGCC
GACCAGCATT TCATGATGAC GACCACGACG GGCGGCGCAG CGCGGGTGCT CACCTGGCTC
GAGCGCTGGC TGCAGACCGA GTGGCCCGAC ATGAAGGTGC GGCTCGCGTC CGTCACCGAC
CACTGGGCGA CGTTCGCGGT GGTCGGCCCG AAGAGCCGCA AGGTCGTGCA GAAGGTGTGC
CAGGACATCG ACTTCGGCAA CGAAGCGTTC CCGTTCATGA GCTATCGCAA CGGCACCGTC
GCGGGCGCCA AGGCGCGCGT GATGCGGATC AGCTTCTCGG GCGAACTGGC CTACGAAGTG
AACGTGCCGG CCAATGCCGG GCGCGCGGTG TGGGAAGCGC TGATGGCCGC GGGTGCCGAG
TTCGACATCA CGCCGTACGG CACCGAAACG ATGCACGTGC TGCGCGCGGA AAAGGGCTAC
ATCATCGTCG GCCAGGACAC CGACGGTTCG ATCACGCCAT CCGACCTCGG CATGGGCGGC
CTCGTCGCGA AGACGAAGGA CTGCCTCGGC AAGCGTTCGC TCGCGCGTTC CGATACCGCA
AAGGCGGGCC GCAAGCAGTT CGTCGGCCTG TTGACCGACG ATGCGCAGTG CGTGCTGCCG
GAGGGCGCGC AGATCATCGA CAAGGACACG CAGGTCCGCG TGACGGAACC GACGCCGATG
ATCGGCCACG TGACGTCGAG CTACTACAGC CCGATCCTGC AACGTTCGAT CGCGCTGGCG
GTGGTGAAGG GTGGTCTGGG CAAGATGGGC GAGAGCGTCG TGATTCCGCT GGCCAACGGC
AGGCGTGTCA CCGCGAAGAT CGCGAGCCCG GTTTTCTACG ATACGGAAGG GGTGCGTCAG
CATGTGGAAT GA
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| Protein sequence | MSQKDRLGTG GRINRAIPLT FTFNGRTYQG FQGDTLASAL LANGVHFVAR SFKYHRPRGI
MTAGVEEPNA VVQLESGPYS VPNARATEIE LYQGLIATSV NAEPSLENDR YAISQMFSRF
LPAGFYYKTF MWPRKMWPKY EEKIREAAGL GKAPDMRDAD RYDKCYAHCD VLVVGGGPTG
LAAAHAAAMA GARVILVEDQ RELGGSLLSC RAEIGGKPAL QWVEKIEAQL RKLPDVSILT
RSTAFGYQDH NLVTVTQRLT DHLPISMRKG TRELLWKVRA KRVILATGAH ERPIVFGNND
LPGVMLAGAV STYIHRFGVL PGRDAVVFTN NDRAYQTALD LKACGAKVTV VDARAPGNGA
LPAVAKRQGV TVMHGAVITA ASGKWRVSSV DVASYANGQV GGKQKTLPCD LVATSGGFSP
VLHLFAQSGG KAQWNDDKAC FVPGKTVQAE ASVGAAAGEF ALAHALQLAV DAGAEAAQAA
GCTAAQRAVA PRVAETAEGA LQPLWLIGSR EAAARGPKQF VDFQNDVAVT DILLAAREGF
ESVEHVKRYT AMGFGTDQGK LGNINGMAIL AQALGKSIPE TGTTTFRPNY TPVSFGTFAG
RELGNFLDPV RKTCIHEWHV EHGALFEDVG NWKRPWYFPK NGEDLHAAVK RECLAVRNGV
GMLDASTLGK IDIQGPDAVK LLNWVYTNPW GKLDVGKCRY GLMLDENGMV FDDGVTVRLA
DQHFMMTTTT GGAARVLTWL ERWLQTEWPD MKVRLASVTD HWATFAVVGP KSRKVVQKVC
QDIDFGNEAF PFMSYRNGTV AGAKARVMRI SFSGELAYEV NVPANAGRAV WEALMAAGAE
FDITPYGTET MHVLRAEKGY IIVGQDTDGS ITPSDLGMGG LVAKTKDCLG KRSLARSDTA
KAGRKQFVGL LTDDAQCVLP EGAQIIDKDT QVRVTEPTPM IGHVTSSYYS PILQRSIALA
VVKGGLGKMG ESVVIPLANG RRVTAKIASP VFYDTEGVRQ HVE
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