| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1084 |
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| Symbol | |
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| ID | 1219896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 1142301 |
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| End bp | 1143395 |
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| Gene Length | 1095 bp |
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| Protein Length | 364 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637237450 |
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| Product | porin transmembrane protein |
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| Protein accession | NP_519205 |
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| Protein GI | 17545803 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00229533 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTGC ACCCGCTGGC GCTTTCGCTG CTGCTTGCCG CCCCCGCCCT GGCAAGCGCC
CAGTCCGTGA CGCTGTACGG TGTCGTCGAT ACCGGCGTCG AATATGTCAA CCGCATCGGC
ACGACCGGCA ACAGCGTCGT GCGCATGCCC AACCTCAGCG GCACGGTGCC GTCGCGCTGG
GGGCTGCGCG GCATGGAAGA CCTGGGTGGC GGCACCAGGG CGCTGTTCGC GCTGGAGTCC
GGCTTCGCGA CCGACAGCGG CACCGCCAAC CAGGGTGGCC GCCTGTTCGG CCGGCAGGCC
TGGGTGGGTC TGTCCAACAG CAGTTGGGGC CAGCTCAGCT TCGGCCGGCA GTACACCATG
CTGTTCTGGG CCACCCTCGA TACCGACCTG CTCGGGCCGA ATGCCTACGG CTCCAGCTCG
CTCGACAACT ACCTGCCCAA CGCGCGCGCC GACAACGCCA TCGCCTACAA GGGCAAGTTC
GGCGGCCTGA CGGTCGGCGC CACGTACAGC TTCGGCCGCG ACACCGTCAA CGCGGGGCCC
AGCCCCTCGG GCACCAACTG CGCGGGCGAG AACCCCGCTG ACAGCCTGGC CTGCCGCGAG
TGGTCGGCCA TGCTGATGTA CGAAACCGGC CGATGGGGCC TCTCCGCCGC CTACGACTCG
CTGCGCGGCG GGCCGGGTGC CTTCGCGGGC CTGACCTCCA GCGCACTCAA GGATGACCGG
CTCGCGCTCG GCGGCTATGC GCTGTTCGAC AACGCCCGGA TCGGCCTGGG CTGGATCGGC
CGCCGCAACG GCGCGCTCGC CACCCCGCGC AGCGACCTCT TCTACGCCGG CGCCGCCTAC
GATGTGACCC CGGCGCTGAC GCTGGCCGGC GAGGTGTTCC ATCTCCGGTA TCACAACAGC
GCCAACAAGG CGTGGCTTGG CGCCGTGCGG GCCAGCTACG CGCTGTCCAA GCGCTCGTCG
GTGTATGCCA CCGTGGGCTA CATCGACAAC GGCGGCAGCC TGGCGCTGTC GGTCAGCAGC
GCGGCGACCG GCGCTTCACC CGCGTCGGGC GGCAGCCAGC TGGGCGCGAT GGTCGGGGTC
AAGCACGTCT TCTGA
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| Protein sequence | MKLHPLALSL LLAAPALASA QSVTLYGVVD TGVEYVNRIG TTGNSVVRMP NLSGTVPSRW
GLRGMEDLGG GTRALFALES GFATDSGTAN QGGRLFGRQA WVGLSNSSWG QLSFGRQYTM
LFWATLDTDL LGPNAYGSSS LDNYLPNARA DNAIAYKGKF GGLTVGATYS FGRDTVNAGP
SPSGTNCAGE NPADSLACRE WSAMLMYETG RWGLSAAYDS LRGGPGAFAG LTSSALKDDR
LALGGYALFD NARIGLGWIG RRNGALATPR SDLFYAGAAY DVTPALTLAG EVFHLRYHNS
ANKAWLGAVR ASYALSKRSS VYATVGYIDN GGSLALSVSS AATGASPASG GSQLGAMVGV
KHVF
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