| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1058 |
|---|
| Symbol | |
|---|
| ID | 1219867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1111370 |
|---|
| End bp | 1112887 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637237421 |
|---|
| Product | periplasmic protease signal peptide protein |
|---|
| Protein accession | NP_519179 |
|---|
| Protein GI | 17545777 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.200885 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTACCG CTCGAACCGT TTACGCCTTG CGTCTGCTTT GCGTTGCCGC CGTCTTCGCT
GCCGGTGGCG CGCTGATGCC GGCTTACGCG CAGAACGCCA CCGGTAGCGT GGCGACGGGC
ACCTATGGCC TGCCTGACTT TGCCGATCTG GTCGAAAAGG TCAGCCCGGC GGTGGTCAAT
ATCCGCACCA CCGAGAAGGT GCGGATGCAG AACAACCCGA GCGATGACGA CATGGCCGAG
TTTTTCCGCC GCTTCTTCGG CGTACCGATG CCGGGTACGC CGGGGCAGGG GCAGGGCCAG
AAGCGCCGCA ACGCCCCGCC GCAGGCCGAG GAGGAGCAGA GTCGCGGCGT CGGCTCCGGC
TTCATCATGT CGGGCGACGG CTATGTGCTG ACCAACGCTC ACGTGGTCGA AGGCGCGGAG
ACGATCTACG TGACGCTGAC CGACAAGCGT GAATTCAAGG CCAAGCTGAT CGGCTCCGAC
AAGCGCACCG ATGTGGCGCT GGTCAAGGTG GAGGCCACCG GCCTGCCGAG CCTGAAGCTG
GGCGATTCGG ACAAGGTGCG TGTGGGCGAG TGGGTGCTGG CGATTGGTTC GCCGTTCGGG
CTGGACAACA CCGTCACCGC GGGCATCGTG TCGGCCAAGG GGCGTGACAC CGGCGATTAT
CTGCCGTTCA TCCAGTCCGA CGTGGCCGTG AATCCCGGCA ACTCGGGCGG CCCGCTGATC
AACCTGCGTG GCGAGGTGAT CGGCATCAAC AACCAGATCT TCAGCCAGAG CGGCGGCTAC
ATGGGCATCT CGTTCGCGAT TCCGATCGAT GAAGCGATGC GCGTGGCCGA GCAGCTCAAG
ACGCAAGGCC GGGTGACGCG CGGCCGCATC GGTGTGGCGA TCGACAATGT GCCGAAGGAC
GCAGCGGAGT CGCTGGGCCT AGGCCGTGCG CGTGGCGCCT ATGTGGGCAA TGTCGAGTCG
GGTGGCCCCG CCGACAAGGC AGGCATCGAG GCCGGCGACA TCGTCCTGAA ATTCAATGGG
CGCGACGTCG AGAAGGCCGG TGACCTGCAG CGTCAGGTCG GCGAGAGCAA GCCTGGTACG
CGCGCCACCG TGCAGGTGTG GCGCAAGGGC GCGACGCGTG ATCTGACGGT GACGGTGGCC
GAACTGCAGC CCGATACCAA GGTGGCGCAG CGGGGCAAAG GTGGCCAATC CGACAATGGC
CAGCCGGGCG CCGGCAAGCA GAATGCGCTT GGGCTGGTGG TGGCCGATCT GTCGGAAGGC
GCGCAGCGAG AGTTCAAGAC GAAGGCAGGC GTCGAGGTGC AGGTGGCGGA TGGTCCCGCC
GCGCGCGCCG GCATCCGCCC GGGAGACGTG ATCCTGCGCG TGGGCGACAC CGATGTCACC
AGCGCCAAGC AATTCAACGA CGTGGTCGGC CGGCTGGACA AGAGTCGCAT GGTGGCGGTG
TTCGTCCGCC GTGGCGATGC CACGCAGGTC GTGACGATGC GACCGAGCAC GGCGCGGGCC
GGCGGCGGCC AGCCGTGA
|
|---|
| Protein sequence | MRTARTVYAL RLLCVAAVFA AGGALMPAYA QNATGSVATG TYGLPDFADL VEKVSPAVVN
IRTTEKVRMQ NNPSDDDMAE FFRRFFGVPM PGTPGQGQGQ KRRNAPPQAE EEQSRGVGSG
FIMSGDGYVL TNAHVVEGAE TIYVTLTDKR EFKAKLIGSD KRTDVALVKV EATGLPSLKL
GDSDKVRVGE WVLAIGSPFG LDNTVTAGIV SAKGRDTGDY LPFIQSDVAV NPGNSGGPLI
NLRGEVIGIN NQIFSQSGGY MGISFAIPID EAMRVAEQLK TQGRVTRGRI GVAIDNVPKD
AAESLGLGRA RGAYVGNVES GGPADKAGIE AGDIVLKFNG RDVEKAGDLQ RQVGESKPGT
RATVQVWRKG ATRDLTVTVA ELQPDTKVAQ RGKGGQSDNG QPGAGKQNAL GLVVADLSEG
AQREFKTKAG VEVQVADGPA ARAGIRPGDV ILRVGDTDVT SAKQFNDVVG RLDKSRMVAV
FVRRGDATQV VTMRPSTARA GGGQP
|
|---|
| |