Gene RSc1055 details

Gene Information

• Locus tag: RSc1055
• Symbol: rpoE1
• ID: 1219864
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 1108822
• End bp: 1109421
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637237418
• Product: RNA polymerase sigma factor RpoE
• Protein accession: NP_519176
• Protein GI: 17545774
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02939] RNA polymerase sigma factor RpoE

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.401808
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.607053
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAGTGAAC GCGAAGCCGA CCAGATCCTT GTCGAACGCG TCCAGCAGGG TGACAAGCGG 
GCGTTTGAAC TGTTGGTGGT CAAGTATCAC CGCAAGATCA TCCGTCTGAT CTCACGCCTG 
ATCCGCGATG CCGCGGAGGT GGAGGATGTG GCACAGGATG CCTTCATCAA GGCGTACCGT 
GCGCTGCCCC AGTTCCGGGG CGAATCTGCG TTTTATACGT GGCTGTACCG CATCGCCGTT 
AACACGGCCA AGAATTACCT GGCGACCCAG GGCCGGCGTC CCGAGTCGTC CACCGATATC 
GACACCGAAG AGGCTGAAAC TTTTGCCGAC GGTGAACAAC TAAGGGATAT CAATACGCCG 
GACTCGATGC TGCACACCAA GCAGGTTGCC GAAACGGTCA ATCGCGCGAT GGAGGCGTTG 
CCGGAGGAAT TGCGTACGGC AATTACGCTC CGCGAGATCG AGGGTCTGAG CTATGAGGAA 
ATCGCTGAAG CGATGGAATG TCCGATCGGG ACCGTCCGTT CGCGGATATT TCGGGCACGC 
GAGGCGATTG CCGAGAAATT GCGCCCCTTG CTGGGAACAG CAGAGGGCAA ACGGTGGTAG 

 

Protein sequence

MSEREADQIL VERVQQGDKR AFELLVVKYH RKIIRLISRL IRDAAEVEDV AQDAFIKAYR 
ALPQFRGESA FYTWLYRIAV NTAKNYLATQ GRRPESSTDI DTEEAETFAD GEQLRDINTP 
DSMLHTKQVA ETVNRAMEAL PEELRTAITL REIEGLSYEE IAEAMECPIG TVRSRIFRAR 
EAIAEKLRPL LGTAEGKRW