Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1041 |
Symbol | rluC |
ID | 1219850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1096833 |
End bp | 1097828 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637237404 |
Product | ribosomal large subunit pseudouridine synthase C protein |
Protein accession | NP_519162 |
Protein GI | 17545760 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.017285 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGCGAGG CACTCGACGG CAAATCGGTC GCCTACGTTG AAATCGGCGA AGACGCGCAA GGGCAGCGGA TCGACAACTT TCTGATGCGC TTGGCCAAGG GCGTGCCCAA GAGCCACATT TACCGCATCC TGCGCTCCGG CGAGGTGCGC GTGAACAAGG GCCGCATCGA CGCGGAATAC CGTCTGAACC TCGGCGATCT GGTGCGCATC CCGCCGCTGC GCATCGCCCA GCAATCGCCC GGGCAGGCCG AGGCAGCGCG TGCCGTGCCG GCCGCCGAAT TCACGATTCT CCACGAAGAT ACGCACCTGC TGGTGATCGA CAAGCCGGCC GGCGTGGCCG TGCATGGCGG TTCCGGCGTG GCGTTCGGTG TCATCGAGCA GCTGCGCCGG TCGCGTCCGG AAGCGAAGTT CCTCGAACTG GTGCACCGGC TGGATCGCGA GACCTCCGGC GTGCTGCTGC TGGCCAAGAA GCGCTCGGCG CTGGTTGCGC TGCACGAGCA GATCCGCGAA GGCCAGCTGG ACAAGCGTTA CTTTGCTGCC GTCAAGGGCG TCTGGCCGCA TCAGCGCCAG CACATCAAGG CCCCGCTGTT CAAATACAGC ACGCCGGAAG GCGAGCGGCG CGTGCGCGTG CAGGCCGACG GGCAGCCGTC GCACACGGTG TTCAACAGGG TGGGGGTGTT CGGCCCCTAC ACGCTGCTGG AGGCCGAGCT GAAGACCGGC CGCACGCACC AGATCCGCGT GCACCTCGCG CACGCCGGCT TCCCGATTCT CGGCGACGAC AAATACGGCG ATTTCGCGCT CAACAAGGCG CTGTCGCGCG CGAATGCGTC GCCACGGCTG GCCCGCATGT TCCTGCATGC GCACACGCTG CGGCTGACCC ATCCGCAGAG TGGTGAAATC GTGACCTTCA AGGCACCGCT GCCGGCCGAG TGTGCCGCGT TCCTCAACGC GTTCTCCCCG CAGGATCCCG ATTCCGATGC CGCAGCAGCG CTTTGA
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Protein sequence | MREALDGKSV AYVEIGEDAQ GQRIDNFLMR LAKGVPKSHI YRILRSGEVR VNKGRIDAEY RLNLGDLVRI PPLRIAQQSP GQAEAARAVP AAEFTILHED THLLVIDKPA GVAVHGGSGV AFGVIEQLRR SRPEAKFLEL VHRLDRETSG VLLLAKKRSA LVALHEQIRE GQLDKRYFAA VKGVWPHQRQ HIKAPLFKYS TPEGERRVRV QADGQPSHTV FNRVGVFGPY TLLEAELKTG RTHQIRVHLA HAGFPILGDD KYGDFALNKA LSRANASPRL ARMFLHAHTL RLTHPQSGEI VTFKAPLPAE CAAFLNAFSP QDPDSDAAAA L
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