| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1040 |
|---|
| Symbol | rne |
|---|
| ID | 1219849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 1093031 |
|---|
| End bp | 1096075 |
|---|
| Gene Length | 3045 bp |
|---|
| Protein Length | 1014 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637237403 |
|---|
| Product | ribonuclease E protein |
|---|
| Protein accession | NP_519161 |
|---|
| Protein GI | 17545759 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.120307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCA TGTTGTTCAA TGCGACGCAG CAAGAAGAAT TGCGCGTCGC CATTGTCGAT
GGCCAGAAAC TGATCGACAT CGACATCGAG ACCGCCGGGC GCGAACAGCG CAAAGGCAAC
ATCTACAAGG GTGTCATCAC CCGCATCGAA CCGTCGCTGG AAGCCTGCTT CGTCAATTAC
GGCGAAGAGC GGCACGGTTT CCTCCCCTTC AAGGAAGTCG CCCGCGCCTA CTTCAAGAAC
GGCGTGGATG TGCGCACCGC CCGCATCCAG GACGCGCTGG CCGAAGGCCA GGAACTGATC
GTCCAGGTGG AAAAGGAAGA GCGTGGCAAC AAGGGCGCGG CCCTGACCAC CTTCATCTCG
CTGGCCGGCC GCTATCTCGT GCTGATGCCG AACAACCCGC GCGGCGGCGG CGTGTCGCGC
CGGATCGAAG GCGAAGACCG TCAGGAACTG CGCGAAACCA TGGCGCAGCT GCAGGTTCCG
GAAGGCATGA GCATCATTGC CCGCACCGCC GGCATCGGCC GCTCGGCCGA AGAGCTGCAG
TGGGACCTGA ACTACCTGAT GCAGCTGTGG AAGGCGGTCG ACGGCGCCGC GGTCGAGAAC
AAGGCGCCGC TGCTGATCTA TCTCGAATCG AGCCTGGTGA TCCGCGCCAT CCGCGACTAC
TTCCAGCCGG ACATCGGTGA GATCCTGATC GATACCGACG ATATCTATGA TCAGGCCCGC
GCCTTCATGA GCGTGGTGAT GCCCGACAAC ATGAATCGGG TGAAGAAGTA CCGCGACGAC
GTTCCGCTGT TCTCGCGCTT CCAGATCGAA CACCAGATCG AATCGGCGTA TTCGCGCATG
GTGATGCTGC CGTCCGGCGG CGCCATCGTG ATCGACCATA CCGAAGCGCT GGTCGCCGTC
GACGTGAACT CGGCGCGTGC CACCAAGGGC GCCGACATCG AGGAAACCGC GCTGCGTACC
AACCTCGAAG CAGCCGATGA GATTGCCCGC CAGCTGCGCC TGCGCGACCT GGGCGGCCTG
ATCGTGATCG ACTTCATCGA CATGGAGTCG AGCAAGGCCC AGAAGGACGT GGAGACCCGC
CTGAAAGACG CGCTGCGCCA TGACCGCGCC CGCGTGCAGA TGGGCAAGAT CAGCCGCTTC
GGCCTGATGG AGCTGTCGCG CCAGCGCCTG CGTCCGTCGC TGTCCGAGGG CTCGCACGTT
ACCTGCCCGC GCTGCAACGG CACGGGCCAT ATCCGCGATA CCGAATCGTC CGCCCTGCAG
GTGCTGCGCA TCATCCAGGA AGAGGCGATG AAGGAAAACA CGGCCGCGAT CCACTGCCAG
GTGCCGGTGG AAGTGGCTGC GTTCCTGCTC AACGAGAAGC GCCCGGACAT CAACCTGATC
GAGACGCGCT TCAAGGTCAA TGTGCTGCTG ATCCCGAACA AGCACCTGGA AACGCCGCAC
TACAAGCTCG AGCGCCTGCG TCACGACGAT CCGCGCCTGG ACGACAACAA GGCCAGCTAC
AAGATGGCCG AGGAAGCCGC CAAGGAACTG GAGGCCGACA CCGCCTACAG CACCCGCAAG
GAAGCGGCCA AACCGCGCCA GGAAGCGGCG GTCAAGGGCA TCACGCCGGA ACAGCCGGCG
CCGGTGTCGG TGCCGCGTTC CGAGCGGCCG GCCCGCGCCG AGGCGACTCC GGCCGCCCCG
CAGGCCGCGG CCCCGGTGCC CGCACAGGGC GGGTTCGTGT CGTGGCTGAA GTCGCTGTTT
GGCGGCAAGC CGGCCGAGCC GGTGGTCGCC GCGCCCGTCG AGACGCCCAA GCGCGCTGAA
GACGGCAACC GCCGCGACCG CGGCAACCGC CAGGACCGCG GCGGCCGCAC CGGCCAGCGC
GGGGAGCGTG GTGAACGCCA GGGCCAGCAA CAAGCCGGCC GCGACGGCCA GCGTCAGGGC
CAAGGCCGCG ACGGCGGCCG CAACGAAGCC CGCGAGGGCC AGGCCCAGCG TGAAGGTCAA
CGCGAAGGCC AGCGCGGCGG CCGCGACCGC AACCGTCAGC CGGCAGAAAC CGCCGAGCGC
GAAACGGTCG AGGCACGTCA GCCGCAGCAG GGCCAGGAAG CACGCGAAGG CCAGGGCCGC
CGCGAACGCA GCCAGGAACG CCGCGAGCGC GCACCGCGCG AAGGCCGCGA GGGCCGTGAA
CCGCGTGAGG GCCGCGAGCC GCGCGAAAGC CGCGACAACC GTGAAGGCCG CGAGCGCGAC
ACGCAGCAGG CCAAGGAAGG TGCCAGCGCC GCAGCCGCAA CTGCGGTGGA AGGCCTGATC
GATCCGACCG CAGCCGCCCA GGTCCCGCAA ACGCTGCTGG ACACCACCGT GCCTGCCGAA
GCAATCACTG CCGAGGTTGC AGCACCGGAC GCGGAAGGCA GCGGTGAAGG CGAAGAGCGC
CGTCGCCGCG GCCGCCGTGG CCGCAATCGC TATCGCCGTG ACCGTGAGGG CGCGGAAGGC
GTGCGCACCG AAGGCGAGGG CGAAAGTGAG GGCGAGGGCG AGACCGCAGC CGGCGAGCCG
GCAGTGGAGA CCCCGCCCGC GGTGGAAGCC GCACAGCCTG CAGCCCCGGT GCAGCACGAA
ACCGTGGCAG CGCCGGTGCA GCCGGTGGAA ACGCCGGCAC CGGTCGAAAC CGCTGCGCCG
GTCGTGCAGG AACCGGTGCA GGCCGCCGAG GCTGTGAAGC CTGCCCCGAC GCTGCCGGCC
GCGCAGCCGG CCGAGCCGGT CGCTGCGGTG GTGGCAGCAA CGCCCCCGAC GGAAACGGCC
GCGGACACCA TCGTGACGGC CCTTGCCGAA GTGCCGGCAC CGGTGGCCAG CACGGTGGCC
AAGGCTCCGG CGCTGCCGAT CGGCACGCTG CAGGCCGTGG TGGCCGATGC CGGCATGACG
TGGGTCCACA CCGACGAGCA GAAGCTGCAG GCAGCGAAGG AAGACGCCGC CCGCACCGTC
ACGCCGCCGC GCGTGCCGCG CGAGCGCAAG CCGCTGCCGC CGATCCAGCA GGGGCCGATG
GTCCTGGTCG AAACCAGCCG TCCGACGGAC GGCGCCGACC AGTAA
|
|---|
| Protein sequence | MKRMLFNATQ QEELRVAIVD GQKLIDIDIE TAGREQRKGN IYKGVITRIE PSLEACFVNY
GEERHGFLPF KEVARAYFKN GVDVRTARIQ DALAEGQELI VQVEKEERGN KGAALTTFIS
LAGRYLVLMP NNPRGGGVSR RIEGEDRQEL RETMAQLQVP EGMSIIARTA GIGRSAEELQ
WDLNYLMQLW KAVDGAAVEN KAPLLIYLES SLVIRAIRDY FQPDIGEILI DTDDIYDQAR
AFMSVVMPDN MNRVKKYRDD VPLFSRFQIE HQIESAYSRM VMLPSGGAIV IDHTEALVAV
DVNSARATKG ADIEETALRT NLEAADEIAR QLRLRDLGGL IVIDFIDMES SKAQKDVETR
LKDALRHDRA RVQMGKISRF GLMELSRQRL RPSLSEGSHV TCPRCNGTGH IRDTESSALQ
VLRIIQEEAM KENTAAIHCQ VPVEVAAFLL NEKRPDINLI ETRFKVNVLL IPNKHLETPH
YKLERLRHDD PRLDDNKASY KMAEEAAKEL EADTAYSTRK EAAKPRQEAA VKGITPEQPA
PVSVPRSERP ARAEATPAAP QAAAPVPAQG GFVSWLKSLF GGKPAEPVVA APVETPKRAE
DGNRRDRGNR QDRGGRTGQR GERGERQGQQ QAGRDGQRQG QGRDGGRNEA REGQAQREGQ
REGQRGGRDR NRQPAETAER ETVEARQPQQ GQEAREGQGR RERSQERRER APREGREGRE
PREGREPRES RDNREGRERD TQQAKEGASA AAATAVEGLI DPTAAAQVPQ TLLDTTVPAE
AITAEVAAPD AEGSGEGEER RRRGRRGRNR YRRDREGAEG VRTEGEGESE GEGETAAGEP
AVETPPAVEA AQPAAPVQHE TVAAPVQPVE TPAPVETAAP VVQEPVQAAE AVKPAPTLPA
AQPAEPVAAV VAATPPTETA ADTIVTALAE VPAPVASTVA KAPALPIGTL QAVVADAGMT
WVHTDEQKLQ AAKEDAARTV TPPRVPRERK PLPPIQQGPM VLVETSRPTD GADQ
|
|---|
| |