| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1006 |
|---|
| Symbol | |
|---|
| ID | 1219815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 1056284 |
|---|
| End bp | 1057090 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637237369 |
|---|
| Product | ferredoxin |
|---|
| Protein accession | NP_519127 |
|---|
| Protein GI | 17545725 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2878] Predicted NADH:ubiquinone oxidoreductase, subunit RnfB |
|---|
| TIGRFAM ID | [TIGR01944] electron transport complex, RnfABCDGE type, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.235991 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.110987 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTTTCCT TGGCCCCGTC CCTGGCCGAC CGGCTCGAAG ACCTGCTGCC GCAGACGCAA
TGCACCAAGT GCGGCTACAA CGGCTGCCGC CCCTACGCCG AAGCCATGGC GCGCGGCGAA
GCGCTGCCCA ACCGCTGCCC GCCGGGCGGC GCGGAAGGCA TCCGGCGCCT GTCCGAGGCG
CTCGGGCGCA CCGGCCCGCT GCTCGCGCTG GACTCTGCGC ACGGCGTCGA GCAGCCGCGC
GCCCTGGCGC TCATCGATCC GGAGCGCTGC ATCGGCTGCA CGCTGTGCAT CCAGGCCTGC
CCTGTCGATG CCATCGTGGG CGCGCCCAAG GCGATGCATG TGGTCCTGGA GGACTGGTGC
ACCGGCTGCG ACCTCTGCGT CGCGCCCTGC CCGGTCGACT GCATCGACAT GGTGCCCGCG
ACCGGCGAGC GCACCGGCTG GAACGCCTGG AACCAGGCGC AGGCCGACGA GGCGCGCGAG
CGCTACACCT TCCGCAACGC ACGCCTGGCC CGCGAGAAGG CCGAGAACGA AGCGCGCCTG
GCCGAGAAGG CCGCCGCCAA GCTGGCCGCC GTCAGCGCCG AGCAGCCCGC CGACGAGGCC
GAGCGCGCCG CCCAGGCCCG CAAGCAGGCG ATCATCCAGG CCGCCATCGA GCGCGCCCGC
CAGAAGCAGA CCGAGATGGC CGCGCGCGGG CAAGGTCCGC GCAACGTCAC CAACGTCCCG
GCCGATGTGC AGGCCCAGAT CGACGAGGCC GAGGCGCGCC GCAAGCGCAT CGCCGACCTC
AGCAAGCCGC CCTCGGACAA GCCCTGA
|
|---|
| Protein sequence | MVSLAPSLAD RLEDLLPQTQ CTKCGYNGCR PYAEAMARGE ALPNRCPPGG AEGIRRLSEA
LGRTGPLLAL DSAHGVEQPR ALALIDPERC IGCTLCIQAC PVDAIVGAPK AMHVVLEDWC
TGCDLCVAPC PVDCIDMVPA TGERTGWNAW NQAQADEARE RYTFRNARLA REKAENEARL
AEKAAAKLAA VSAEQPADEA ERAAQARKQA IIQAAIERAR QKQTEMAARG QGPRNVTNVP
ADVQAQIDEA EARRKRIADL SKPPSDKP
|
|---|
| |