Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0888 |
Symbol | |
ID | 1219696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 933257 |
End bp | 935029 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637237250 |
Product | activation/secretion protein |
Protein accession | NP_519009 |
Protein GI | 17545607 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.60277 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATACA AGAAAAAATC ACTGCCGCTC GCACTCGGTG CGGTCGGTTT TCTGATGTCA CATCTTCCAG CCGACGTCTT CGCCCAAACA CCCCCCACCC AGTCGGCAGC CACTGCAACC GCCAACACAG AACAGGAACA ACGGCTGCGC CAACAGCAAC AAGCCCGCGA ACGCGAGCAA GCCGTGCAGG CCCCCGCAGT CCGCGCCCAG CAAGCCGCCC CGGCCGAGTT CCCCGAACTC CCCACCGAAA CACCCTGCTT CCGCATCGAC CGTTTCGCAC TGGAGGTCCC GCAGGACTTG CCCGAGGCCG CCCGCACAAA GGGCGCCTCT GCGCTGCCCC AAGACCCCTT CGCCTTCGCC CAGGCATGGC TTGACCACTA CACCGGCGCC TGCGTCGGCA AGCAAGGCGT GGACCTGCTC ACCAAAGGCG TCTCGCAAGC CATCCTGAGC CGGGGCTATG TGACCACACG CGTGCTGCTG CCCCAGCAGG ACCTGAGCAC CGGCACGCTG CGCTTCGTCC TGGTGCCCGG CATGATCGGG CAGATCCGTT TCGCGCAGGC CGATGTGCGG GGCACCTGGA AATCCGCCTT CCCCTCACGC CCGGGTGACC TGCTGAACCT GCGCGACCTC GAACAGGGCC TGGAGCAAAT GAAGCGCGTC GCCAGCCAGG ACGTCGACAT GCAGCTCGTG CCCACGGACG TGCCGGGCGT GAGCGATGTG GTGATCTCGG TCAAGCGCAC CAAGCCCTGG ACGGTCGTCG CTGCGGTGGA CAACTCGGGC ACGCGGTCGA CGGGCAAGCT GCAAGGCAAC CTGAGCCTCA GCCTCGACAA CCCGCTGGGA CTGAGCGACC TGTTCAACGT GGGCTACAGC CAGGACCTGG ATTTCAGCAA CAAGGAACGT GGCACCCACG GCTGGAACGG CTTCTACTCG GTGCCGTGGG GGTACTGGAC GGCGACGGTG TCGGCGTATT CCAGCACCTA CTTCCAGCAG ATCGCGGGCG TCAACCAGAC CTTCGTGTCG AGCGGCAATT CGCAGAACTT CGACGTCAAG CTGCAGCGTG TCATCGAGCG TTCGCAGAAC GATGTGCTGG GCGTGCAGTT CCGGCTATCC AAGCGGTTCG GCAAGAACTT CGTCGACGAC ACCGAGATTC CCCAGCAGCG GCGCAACAAC ACGGTGGCGG AAGCCGGCCT GACGGACCGC CATTACTTCG GGGCCGCGCA GTTCGACGGC AGCCTGCTGC TCCGCCACGG CGTGGGCGAC TTCGGTGCAC AGGACGACAC GCTGGCCGAC GGCGGTGGCC CGACCTGGCA CTATCGCATG CTGGTGGCGG ATGCCAACCT GTCGGTGCCG TTCAAGGTGG GGACGCAGCC ACTGCGGTAT GTGACCACGT TCCGTGGGCA GTTCACCAAC GACCATCTGT ATTCGATCGA CGCGATCACC ATCGGCAGCC GCTACACCGT GCGGGGCTTC GATGGCGAGA TGTCGCTGCT GGGTGATCGC GGCTTCTATT GGCGCAATGA GCTGCAAGCG CCGATCGGCA ACACCGGCCT GTCGCTCTAT GGGGGGCTCG ACTACGGCCA TGTCTATGGC CCGTCGACGG TGGGCTTGGC GGGCACCCAA CTGGCGGGCG CAGTGATCGG GCTGCGCGGC GGATGGGGCA CGTCGTATGG TTCGCTGTCC TACGACCTGT TCATCGGTAC GCCAGTCTAC AAGCCAGCAG CGTTCAATAC CGCCAGGATC ACGACCGGGT TCCAACTGGT CTACCAGTAT TGA
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Protein sequence | MQYKKKSLPL ALGAVGFLMS HLPADVFAQT PPTQSAATAT ANTEQEQRLR QQQQAREREQ AVQAPAVRAQ QAAPAEFPEL PTETPCFRID RFALEVPQDL PEAARTKGAS ALPQDPFAFA QAWLDHYTGA CVGKQGVDLL TKGVSQAILS RGYVTTRVLL PQQDLSTGTL RFVLVPGMIG QIRFAQADVR GTWKSAFPSR PGDLLNLRDL EQGLEQMKRV ASQDVDMQLV PTDVPGVSDV VISVKRTKPW TVVAAVDNSG TRSTGKLQGN LSLSLDNPLG LSDLFNVGYS QDLDFSNKER GTHGWNGFYS VPWGYWTATV SAYSSTYFQQ IAGVNQTFVS SGNSQNFDVK LQRVIERSQN DVLGVQFRLS KRFGKNFVDD TEIPQQRRNN TVAEAGLTDR HYFGAAQFDG SLLLRHGVGD FGAQDDTLAD GGGPTWHYRM LVADANLSVP FKVGTQPLRY VTTFRGQFTN DHLYSIDAIT IGSRYTVRGF DGEMSLLGDR GFYWRNELQA PIGNTGLSLY GGLDYGHVYG PSTVGLAGTQ LAGAVIGLRG GWGTSYGSLS YDLFIGTPVY KPAAFNTARI TTGFQLVYQY
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