Gene RSc0888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0888 
Symbol 
ID1219696 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp933257 
End bp935029 
Gene Length1773 bp 
Protein Length590 aa 
Translation table11 
GC content65% 
IMG OID637237250 
Productactivation/secretion protein 
Protein accessionNP_519009 
Protein GI17545607 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2831] Hemolysin activation/secretion protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.60277 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAATACA AGAAAAAATC ACTGCCGCTC GCACTCGGTG CGGTCGGTTT TCTGATGTCA 
CATCTTCCAG CCGACGTCTT CGCCCAAACA CCCCCCACCC AGTCGGCAGC CACTGCAACC
GCCAACACAG AACAGGAACA ACGGCTGCGC CAACAGCAAC AAGCCCGCGA ACGCGAGCAA
GCCGTGCAGG CCCCCGCAGT CCGCGCCCAG CAAGCCGCCC CGGCCGAGTT CCCCGAACTC
CCCACCGAAA CACCCTGCTT CCGCATCGAC CGTTTCGCAC TGGAGGTCCC GCAGGACTTG
CCCGAGGCCG CCCGCACAAA GGGCGCCTCT GCGCTGCCCC AAGACCCCTT CGCCTTCGCC
CAGGCATGGC TTGACCACTA CACCGGCGCC TGCGTCGGCA AGCAAGGCGT GGACCTGCTC
ACCAAAGGCG TCTCGCAAGC CATCCTGAGC CGGGGCTATG TGACCACACG CGTGCTGCTG
CCCCAGCAGG ACCTGAGCAC CGGCACGCTG CGCTTCGTCC TGGTGCCCGG CATGATCGGG
CAGATCCGTT TCGCGCAGGC CGATGTGCGG GGCACCTGGA AATCCGCCTT CCCCTCACGC
CCGGGTGACC TGCTGAACCT GCGCGACCTC GAACAGGGCC TGGAGCAAAT GAAGCGCGTC
GCCAGCCAGG ACGTCGACAT GCAGCTCGTG CCCACGGACG TGCCGGGCGT GAGCGATGTG
GTGATCTCGG TCAAGCGCAC CAAGCCCTGG ACGGTCGTCG CTGCGGTGGA CAACTCGGGC
ACGCGGTCGA CGGGCAAGCT GCAAGGCAAC CTGAGCCTCA GCCTCGACAA CCCGCTGGGA
CTGAGCGACC TGTTCAACGT GGGCTACAGC CAGGACCTGG ATTTCAGCAA CAAGGAACGT
GGCACCCACG GCTGGAACGG CTTCTACTCG GTGCCGTGGG GGTACTGGAC GGCGACGGTG
TCGGCGTATT CCAGCACCTA CTTCCAGCAG ATCGCGGGCG TCAACCAGAC CTTCGTGTCG
AGCGGCAATT CGCAGAACTT CGACGTCAAG CTGCAGCGTG TCATCGAGCG TTCGCAGAAC
GATGTGCTGG GCGTGCAGTT CCGGCTATCC AAGCGGTTCG GCAAGAACTT CGTCGACGAC
ACCGAGATTC CCCAGCAGCG GCGCAACAAC ACGGTGGCGG AAGCCGGCCT GACGGACCGC
CATTACTTCG GGGCCGCGCA GTTCGACGGC AGCCTGCTGC TCCGCCACGG CGTGGGCGAC
TTCGGTGCAC AGGACGACAC GCTGGCCGAC GGCGGTGGCC CGACCTGGCA CTATCGCATG
CTGGTGGCGG ATGCCAACCT GTCGGTGCCG TTCAAGGTGG GGACGCAGCC ACTGCGGTAT
GTGACCACGT TCCGTGGGCA GTTCACCAAC GACCATCTGT ATTCGATCGA CGCGATCACC
ATCGGCAGCC GCTACACCGT GCGGGGCTTC GATGGCGAGA TGTCGCTGCT GGGTGATCGC
GGCTTCTATT GGCGCAATGA GCTGCAAGCG CCGATCGGCA ACACCGGCCT GTCGCTCTAT
GGGGGGCTCG ACTACGGCCA TGTCTATGGC CCGTCGACGG TGGGCTTGGC GGGCACCCAA
CTGGCGGGCG CAGTGATCGG GCTGCGCGGC GGATGGGGCA CGTCGTATGG TTCGCTGTCC
TACGACCTGT TCATCGGTAC GCCAGTCTAC AAGCCAGCAG CGTTCAATAC CGCCAGGATC
ACGACCGGGT TCCAACTGGT CTACCAGTAT TGA
 
Protein sequence
MQYKKKSLPL ALGAVGFLMS HLPADVFAQT PPTQSAATAT ANTEQEQRLR QQQQAREREQ 
AVQAPAVRAQ QAAPAEFPEL PTETPCFRID RFALEVPQDL PEAARTKGAS ALPQDPFAFA
QAWLDHYTGA CVGKQGVDLL TKGVSQAILS RGYVTTRVLL PQQDLSTGTL RFVLVPGMIG
QIRFAQADVR GTWKSAFPSR PGDLLNLRDL EQGLEQMKRV ASQDVDMQLV PTDVPGVSDV
VISVKRTKPW TVVAAVDNSG TRSTGKLQGN LSLSLDNPLG LSDLFNVGYS QDLDFSNKER
GTHGWNGFYS VPWGYWTATV SAYSSTYFQQ IAGVNQTFVS SGNSQNFDVK LQRVIERSQN
DVLGVQFRLS KRFGKNFVDD TEIPQQRRNN TVAEAGLTDR HYFGAAQFDG SLLLRHGVGD
FGAQDDTLAD GGGPTWHYRM LVADANLSVP FKVGTQPLRY VTTFRGQFTN DHLYSIDAIT
IGSRYTVRGF DGEMSLLGDR GFYWRNELQA PIGNTGLSLY GGLDYGHVYG PSTVGLAGTQ
LAGAVIGLRG GWGTSYGSLS YDLFIGTPVY KPAAFNTARI TTGFQLVYQY