| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0800 |
|---|
| Symbol | |
|---|
| ID | 1219608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 846627 |
|---|
| End bp | 848744 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637237162 |
|---|
| Product | putative ferrisiderophore receptor signal peptide protein |
|---|
| Protein accession | NP_518921 |
|---|
| Protein GI | 17545519 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTCGCGA TGACCAGCCG TCTCGCGGCA CGCGCGCTGT CGTGCGCGCT CGCCGCCATT
CCTCTTGCCG TGTCGACCCT GGCGCGCGCC GATGCCGCCT CCGGCACGGA TGCCGCCGCC
ACCGTCGATC TCGACGCAAC CACCGTCACC GCGCGCAGCC AGCGCGGGTT CGCCGCCAGC
ACGGCCGAGG TCGGCTCGTT CCGCGGGCAG TCGCTGCGCG ACATCCCGGC CACCGTCAAC
GTCGTCACGC GCGAGGCGCT CGACGCGCAG CAGGACCGCA CGCTGTACGA CGCGCTGCGC
AACACCGCGG GCGTGACGCG ACAGCAGCTC TCGGGCGAGA CTTTCGACAA CCTCGCCATC
CGCGGCGTGA CGCTGGAGAA CCGCACCAAC TTCCGCCTCA ACGGCTCGAT GCCGGTCTTC
AACCTGATGG CGATCCCGCT GGAGGACAAG GAGCGCGTGG AGGTGCTCAA GGGCGTGTCG
GCGCTCTACT ACGGCTACAC CACGCCGGGC GGCATGGTGA ACCTCGTCAC CAAGCGCGCG
GGCAACACGC CGGTCACCTC GGTCGGCATG TCGGTCGACA GCAACGGCAC CGCCATCGCC
AACGTCGACG TGGCCCGCCG CTTCGGCGAA GACAACCAGT ACGGCCTGCG CTTCAATGCC
GCGGGCGGCC GGCTGGGATC GGCCACCAGC GGCATCGACG GCGATCGCCA GATGGCGAGC
CTGGCCTTCG ACTGGAAGGT CAACAGCCGC CTGAGCCTGA AGGCCGATGT GGAGTACGCG
CGCCAGGTCA TCACCGAGCA GTCGGTGGTG ACGCTGCCGG CCGCGAAGAA CGGCGTCATC
TCGCTGCCCG CCATGCCGGA CCCGACCAAG CGCCTGTCGC CGGACTGGGC CAAGTTCCGC
GCCAACAGCA CCACCGCGAT GCTGCGCGCC GATTACGCGC TCAACGACGA CTGGCTGGTG
ACGGTCGAGG GCGGCACCTC GGAGCTGGCG CGCACGCGGG CCTTCACGGA AATCGGCAGC
GTCAACGCGG TGACCGGCAA GGGCACGATC TCGGGCAACC GCCAGGACGG CCGCTGGACC
ACCGGCCACC TGCGCGCCGA CCTCAACGGC ACCCAGATGA CCGGCTCGGT CAAGCACGAG
CTGACCTTCG GCGTGGCGCG CTCGGAGATG CGCCAGGCCG CGGTGTATTC CAGCCGCTTC
TCCGGCACGC AGAACCTGTA CAACCCGGTC GACCTCGGCT GGCTGCCGAC CACCGGCACC
AGCGTCACCG CCGCGCAGCG CGCCGTCGAC ACCGGCGTCT ACGCGCTGGA CCGCATGACC
CTGACGCAGC ACTGGCAGGT CATCGCCGGC CTGCGCTACA CCAGCTACAC CAGCGTGCAG
GCGCCCAACC GCTACGAGGC CAGCAAGACC ACGCCGCTCG GCGCGCTGAT CTACAAGTTC
ACCCCGACCC TGTCGGCCTA TGCCTCGTAC GCGCAGGGCC TGGAGGCGGG CGACCGCGCG
CCCAACACCG CCGCCAACGC CAACGTGGCG ATGCCGCCCG CGGTCAGCAA GCAGAAGGAA
GTGGGCGTGC GCTATGAAAC GCCGGCCGGC ACCCAGCTGT CGGCGGCGCT GTATGAGATC
GACCGGGCCG CCAGCTATAC CAACGCTTCC AACGTCTACG TGCAGGACGG CCGCCAGCGC
ATCCGCGGCC TGGAACTGAA TGCGCAGGGA CGCGTCACGA ACGACCTGTC GCTGCTGGCC
TCGGCCGGCT GGATCGACGC CAAGTTCCGC GGCGTCGGCA ACGGCCTCGA CGGCAAGACG
CCGGAGAACA CGCCGCGCGC CACCGCCAGC CTGTTCGCCG AATACACCCT GCCGATGCTG
CGCTCGGTGT CGTTCAACGC CGGCGCCTAT TACGTCGGCC CGCGCCCGGT CAACGACGCC
GACCAGGCGT GGCTGGGCGG CACCACGCTG TTCGGCGCCG GCGCGCGCTA TGTCACGCGC
GTCGCCGGCA AGCGCACCAC CTGGCAGCTC AACGTCGACA ACCTGACCGA CAAGCGCTAC
TGGGCGGGTG CCGGCAACAA CCGGCTGTCG ATGGGCGCGC CGCGCGTGTT CAAGCTGTCG
ATGAAGATCG ATCTCTGA
|
|---|
| Protein sequence | MLAMTSRLAA RALSCALAAI PLAVSTLARA DAASGTDAAA TVDLDATTVT ARSQRGFAAS
TAEVGSFRGQ SLRDIPATVN VVTREALDAQ QDRTLYDALR NTAGVTRQQL SGETFDNLAI
RGVTLENRTN FRLNGSMPVF NLMAIPLEDK ERVEVLKGVS ALYYGYTTPG GMVNLVTKRA
GNTPVTSVGM SVDSNGTAIA NVDVARRFGE DNQYGLRFNA AGGRLGSATS GIDGDRQMAS
LAFDWKVNSR LSLKADVEYA RQVITEQSVV TLPAAKNGVI SLPAMPDPTK RLSPDWAKFR
ANSTTAMLRA DYALNDDWLV TVEGGTSELA RTRAFTEIGS VNAVTGKGTI SGNRQDGRWT
TGHLRADLNG TQMTGSVKHE LTFGVARSEM RQAAVYSSRF SGTQNLYNPV DLGWLPTTGT
SVTAAQRAVD TGVYALDRMT LTQHWQVIAG LRYTSYTSVQ APNRYEASKT TPLGALIYKF
TPTLSAYASY AQGLEAGDRA PNTAANANVA MPPAVSKQKE VGVRYETPAG TQLSAALYEI
DRAASYTNAS NVYVQDGRQR IRGLELNAQG RVTNDLSLLA SAGWIDAKFR GVGNGLDGKT
PENTPRATAS LFAEYTLPML RSVSFNAGAY YVGPRPVNDA DQAWLGGTTL FGAGARYVTR
VAGKRTTWQL NVDNLTDKRY WAGAGNNRLS MGAPRVFKLS MKIDL
|
|---|
| |