Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0786 |
Symbol | |
ID | 1219594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 829489 |
End bp | 832305 |
Gene Length | 2817 bp |
Protein Length | 938 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637237148 |
Product | hypothetical protein |
Protein accession | NP_518907 |
Protein GI | 17545505 |
COG category | [S] Function unknown |
COG ID | [COG5373] Predicted membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.447385 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGTTGGA TATTCGGAAT CATCGGCTTG ATCGTGGGCG CCGCGGTGGG CGGTGTCATG GGCGCCTTCC TGGGGGCGCT GATCGGCGTC GGCCTGGCGG CGGTCATTCT GCATCTGGAT CAGCGCGCCA GTTCGCGGTG GGCGCACCCG GACGCCGACG CGCCGCCTGA TGCGGGCACC CAGCCCGGCG TGCTGCCGGT CACCGAGCGC GTGGCGCGGC TCGAGCACGA GGTGGCGCTG CTGCGGCGGC AGATCGCGGA GCTGAAAGGG CAGTCGTTCG CGACCGCGCC GTCGGTGCCG GAGGCGCCGG AGCAGGCTGC GGCCGCACCG TTGCCCGATC TTGCTTCGGC AACGACCGAG GTGCCGCCGC CCGTCATCTC GCCCGCGCCG ACCATCGCGC CGCAGCCGGC GGCCGTGTCC GCCCCCGCCG CGGAGCCGGC GCCGCTGGAG CCGACATGGG CCGACCGGGC CGTGTCCGCC GCGCGCGACT GGCTGCTGGG CGGCAACAGC GTGGTGCGGG TCGGCATCCT GATCCTGTTC TTCGGCGTGG CCTTCCTGCT CAAGTACGCG GCGGACAACC GCCTGCTGCC GATCGAGTTC CGCCTGGCCG GCGTGGCGCT GGCATCGATC GTGCTGCTCG CCGTCGGCTG GCGCCTGCGC GACAAGCGCC CCGGCTATGC ACTGGTGCTG CAGGGGGGCG GGGTCGGCGT GCTCTACCTG ACGGTCTTCG CGGCGACACG CATGGTGCCG CTGCTCCCGC CGGGCGCGGC GTTTGCGCTG CTGGTGCTGA TCTGCGCGCT GGCGACCGGG CTGGCGGTCC GGCAGAACGC GCCGGCGCTG GCCTTCACCG GCAGTGCGGG CGGGTTCCTG GCGCCGATCC TGATCTCGAC CGGCGCCGGC AGCCATGTCG CGCTGTTCGG CTACTACGCG CTGCTCAACG CGGGCATCTT TGCCATTGCG TGGTTCCGCG CGTGGCGAAT GCTGAATCTG CTGGGCTTCG TGTTCACCTT CGGCATCGCC ACGGCGTGGG GCGTGCTGCG CTATGAGCCC GCGCTGCTGG CGAGTACCGA GCCCTTCCTC ATCCTGTTTT TCCTGATGTA CGCGGGCATT GCGCTGCTGT ATGCGCTGCG CCGCCAGGTC AGCCTCAGGC ACTACGTGGA CGGCACCCTG GTATTCGGCA CGCCGCTGGT GGCGATGGGC CTGCAGGCCG CGCTGGTGCA GCACATCCCG TTTGCGATGG CGTGGAGCGC GACGGCGCTG GCGGCGTTCT ACCTGGCCGT GGCGGCCTGG CTGGCGCCCC GGCGCTCGCA GCTGGGCCTG CTGTTCGAGG TGATGCTCGC GCTGGGCGTG ATCTTCATCA CGCTGGCGAT TCCGCTGGCG TTCGACGGGC GCACCACCAG TGCCGTGTGG GCGCTGGAAG GCGCCGCCGT GGTGTGGGCG GGCGTGCGCC AGCAGCGCCG GCTGGCGCTG GCGGCCGGCC TGCTGCTGCA ACTGGCGGCG GGCGTGGCCT TCGGGATCGG GCAACGCTTC GAGTGGTCGG CGTCGGCGGG CTGGCCGGTG CTCAACAGCC GCTGCATCGG CGGGCTGCTG ATCGCGGCGG CCGGCGTGTT CAGCGGCTGG CGCCTGCAGG GCAAGACCGA GGCGCGCGAC TGGCTGAAGG CCGCGCCGGG GTTGGGCATC GCCGCGTCGG TGTGGGGGCT GCTGTGGTGG CTGGGCAGCG GCAGCGGAGA AATCGACCGC TGGGCATGGC GCCTGCGCAG CGCGCTCGTC GACCGGCCGG ACATTCCGCT CTACGCCGCC TTTGCCGTGC TGACCGCGTG GCTGGCGCAC GGGCTGCGCC GCCGGCTCGA CTGGGCGCTC GCCGAGTGGC CGGCATTGGC GCTGGCTCCC GCGCTCGGGC TGGTGGCGAT CGCGGCGTGC GGGCACTGGG TGCCGTCGCC GCTGGCGGGC TGGGGCGGGC TGGCGTGGAT CGCCTCGGTG GCGCTGGCCT TCGCGCTGCT GCGCCGCCAG GAGCGCGACG TGGGCGATGC CATCCTGGCG CCGCTGCACA CCGTGCTGTT CTGGCTGATC TGCGGCGTGC TGGCCACCGA AGGCTACTGG CGCCTGAACG CCTACGTGCC GGAAGGCACC TGGAGCTTCG CGGCCTGGGC GTACGCCTAT GGCACGTTGC TGGCGCTGCT GGCCGGCGCG GGCTGGCGCA TCCGCTGGCC GATCGCCCGC TTCGAGCGCG CCTATCTGCT GTGGGGCGCC GCGCCGCTGG CCGCGCTGCT GTGGCTGTGG AGCCTGGCGG GCGCCGCCAG CGACGGCAAC GCCGCGCCGC TGTTCTACCT GCCGATCCTC AACCCGCTGG ACGTGGCACA GCTGCTGGTG TTCCTGGCGA TCGCGCTGTG GATGCGCCGC ACCGCGCTGC AGCACCTGGT ACCGCAGCCC GCGGTGATCG GCTACGCGGT CGGCGCGACC CTGTTCATCT GGGCCAACGC GGTGCTGCTG CGCACGCTGC ACCATTGGGC GCACGTGCCG TACACCGCGG ACGGCCTGGG CAACTCGATG CTGGTGCAGG CTTCGCTGTC GATGTTCTGG ACCGTGCTGG CGCTGGCGGT GATGGTGGCC GCCACGCGGC GGGCCAGCCG CGCGCTGTGG TTCACCGGCG CGGTGCTGCT GGGGGTGACC GTGGTCAAGC TGTTCCTGTT CGACCTGTCG CGCGTGACGG GGGTCGAGCG CATCGTTTCG TTCATCGGCA TTGGCGTGCT GCTGCTGCTG ATCGGCTATC TGTCGCCGTT GCCGCCGAAG GCCAGGGTGG AGGAGAGGCC GGCATGA
|
Protein sequence | MRWIFGIIGL IVGAAVGGVM GAFLGALIGV GLAAVILHLD QRASSRWAHP DADAPPDAGT QPGVLPVTER VARLEHEVAL LRRQIAELKG QSFATAPSVP EAPEQAAAAP LPDLASATTE VPPPVISPAP TIAPQPAAVS APAAEPAPLE PTWADRAVSA ARDWLLGGNS VVRVGILILF FGVAFLLKYA ADNRLLPIEF RLAGVALASI VLLAVGWRLR DKRPGYALVL QGGGVGVLYL TVFAATRMVP LLPPGAAFAL LVLICALATG LAVRQNAPAL AFTGSAGGFL APILISTGAG SHVALFGYYA LLNAGIFAIA WFRAWRMLNL LGFVFTFGIA TAWGVLRYEP ALLASTEPFL ILFFLMYAGI ALLYALRRQV SLRHYVDGTL VFGTPLVAMG LQAALVQHIP FAMAWSATAL AAFYLAVAAW LAPRRSQLGL LFEVMLALGV IFITLAIPLA FDGRTTSAVW ALEGAAVVWA GVRQQRRLAL AAGLLLQLAA GVAFGIGQRF EWSASAGWPV LNSRCIGGLL IAAAGVFSGW RLQGKTEARD WLKAAPGLGI AASVWGLLWW LGSGSGEIDR WAWRLRSALV DRPDIPLYAA FAVLTAWLAH GLRRRLDWAL AEWPALALAP ALGLVAIAAC GHWVPSPLAG WGGLAWIASV ALAFALLRRQ ERDVGDAILA PLHTVLFWLI CGVLATEGYW RLNAYVPEGT WSFAAWAYAY GTLLALLAGA GWRIRWPIAR FERAYLLWGA APLAALLWLW SLAGAASDGN AAPLFYLPIL NPLDVAQLLV FLAIALWMRR TALQHLVPQP AVIGYAVGAT LFIWANAVLL RTLHHWAHVP YTADGLGNSM LVQASLSMFW TVLALAVMVA ATRRASRALW FTGAVLLGVT VVKLFLFDLS RVTGVERIVS FIGIGVLLLL IGYLSPLPPK ARVEERPA
|
| |