| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0780 |
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| Symbol | fadD2 |
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| ID | 1219587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 824518 |
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| End bp | 826224 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637237141 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | NP_518901 |
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| Protein GI | 17545499 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.324898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00366167 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCACGAC CGCACTTCCG ATTCTGGCCC CGGCGCCTGC CGACCCATAT CACCGCGCCG
CAGACGAGCC TGTGGTTCAA CCTGGAAGTG TCGGCGCGGC GCTATCCGGA CAAGGATGCG
ATCGTGTTCT ACGGCCGCCA TGTCCGCTAT CGCGAGCTGC ATGACGATGC GCTGGCCGTG
GCCGGCTGGC TGCAGCAGGT GGCGGGCGTC GGCAAGGGCG ACCGCGTGCT GCTCTACATG
CAGAACTGCC CGCAGTTCGT CGCCGCGTAC TACGGCATCC TGCGCGCCGA CGCGGTGGTG
GTGCCGGTCA ACCCGATGAA CCGGCCCGAG GAGTTCAAGC ACTACATCAC CGATGCCGGC
GCCAGCGTGG TGATCTGCAG CGATGATCTC GCCGCCAACG TGACCGCCGC CAACGCCGAC
CTGCCCCAGG CGCAGCGCGT GCGGCACCTG CTCGCCACGT CCTATGCCGA CGCGCTGCCG
GCCACCTGCG ACCATTCCGA GGATGTGCCA CCCGCGTGGC TGACCGCGGC GCATCCGCCC
CAGCCCGGCG CGGTTGCGTG GAAGGACGCC CTGGCGCAGC GCCTCGTGCC CGGCCCGCAC
ACCGCCGGGC CCGACGACCT GGCCGTGATG CCGTACACCT CGGGCACCAC CGGCTTTCCG
AAAGGCTGCA TGCATCCGCA TCGCACCGTC ATGCACAACG TCGTGGGCGG CGCGCTGTGG
TCGCAGGCCA CGATGGAGGG CGTGAGCCTG TCGATCATTC CGCTGTTCCA CGTGACCGGC
ATGCAGTACG GCATGAACGC GCCGATCTAC ATGGGCTCCA CCGTGGTGAT GCTGCCGCGC
TGGGACCGCG AGGTGGCCGG CCGGCTGATC TCGCGCTACA AGGTCACGCA CTGGACCAAC
ATCCCGACCA TGGTGATCGA CTTCCTGGCA AGCCCGCAGC TGGCGGCGTT TGATCTGTCC
AGCCTGGTCT ACATCGGCGG CGGCGGCGCG GCCATGCCGC AGGCGGTGGC CGAGCGCCTG
CACAAGGCGT TCAACCTGCT GTACCAGGAG GGCTACGGCC TGTCGGAGAC CATCGCACCC
ACGCACAGCA ACCCGGCGGA CCGGCCCAAG CTGCAGTGCC TGGGCATGCC CGTCTTCAAC
ACCGACGCGC GCGTGATCGA CCCGCAGACG CTCCAGGAGC TGCCGCCGGG CGAAGTGGGC
GAGATCATCG TCAACGGTCC GCAGGTCTTC CTCGGCTACT GGGGCAAGCC GCAGGCCACC
GCCGAGTCCT TCATCGAGTT CGAGGGCCAG CGCTTCTTCC GCACCGGCGA TCTGGGCCGG
ATGGACGAGG AGGGCTACTT TTTCCTGACC GACCGCCTCA AGCGCATGAT CAACGCCTCG
GGCTTCAAGG TCTGGCCGGC CGAGGTGGAG AGCCTGATGT ACAAGCACCC CGACATCCAG
GAAGCCTGCA TCATCGGCAC GCACGACGCC TATCGGGGCG AGTCGGTCAA GGCGGTGGTC
GTGCTCAAGG CGCATGCCAG GGGCAAGACC ACCGAGGAAG ACATCATCGG CTGGGCGCGC
GACAACATGG CCGCGTACAA ATACCCGCGC GTGGTGGAGT TCGTCGACGC GCTGCCCAAG
TCGGGCACGG GCAAGGTGAT GTGGCGCACG CTGCAGGAGC AGGAGAACGC GCGCAACGCG
GCGGCGGAGA AGCCGGCCGC CGCCTGA
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| Protein sequence | MARPHFRFWP RRLPTHITAP QTSLWFNLEV SARRYPDKDA IVFYGRHVRY RELHDDALAV
AGWLQQVAGV GKGDRVLLYM QNCPQFVAAY YGILRADAVV VPVNPMNRPE EFKHYITDAG
ASVVICSDDL AANVTAANAD LPQAQRVRHL LATSYADALP ATCDHSEDVP PAWLTAAHPP
QPGAVAWKDA LAQRLVPGPH TAGPDDLAVM PYTSGTTGFP KGCMHPHRTV MHNVVGGALW
SQATMEGVSL SIIPLFHVTG MQYGMNAPIY MGSTVVMLPR WDREVAGRLI SRYKVTHWTN
IPTMVIDFLA SPQLAAFDLS SLVYIGGGGA AMPQAVAERL HKAFNLLYQE GYGLSETIAP
THSNPADRPK LQCLGMPVFN TDARVIDPQT LQELPPGEVG EIIVNGPQVF LGYWGKPQAT
AESFIEFEGQ RFFRTGDLGR MDEEGYFFLT DRLKRMINAS GFKVWPAEVE SLMYKHPDIQ
EACIIGTHDA YRGESVKAVV VLKAHARGKT TEEDIIGWAR DNMAAYKYPR VVEFVDALPK
SGTGKVMWRT LQEQENARNA AAEKPAAA
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