Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0771 |
Symbol | |
ID | 1219578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 813642 |
End bp | 815261 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637237132 |
Product | putative transmembrane dehydrogenase (large subunit) oxidoreductase protein |
Protein accession | NP_518892 |
Protein GI | 17545490 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0952307 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0474982 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGAGA CCCGACAGGC CGAGCAGGCC GATATCGTGG TGGTGGGTTC CGGCGTGGCC GGCGCGCTGG TGGCGTACGA GCTGGCGCGC GCGGGCAAGT CGGTGCTGAT GCTGGAGGCC GGGCCCCGCT TGCCGCGCTG GGAGATCGTC GAGCGCTTCC GCAACCAGGC CGACAAGATG GATTTCATGG CGCCGTATCC GTCCACGCCC TGGGCGCCGC ACCCGGAGTA CGGGCCGGAC AACAACTACC TGATCCTCAA GGGCGAGCAC AAGTTCGACT CGCAGTACAT CCGCGCGGTG GGCGGCACGA CGTGGCATTG GGCGGCCTCC ACGTGGCGCT TCCTGCCGAA CGATTTCAAG CTGCGCAGTG TCTACGGCAT CGCGCGCGAC TGGCCGATCC AGTACGACGA CCTGGAGCGC TACTACGGCC GAGCGGAAGC GGCGCTGGGC GTGTGGGGGC CGAACGACGA GGAACTCGGC TCACCGCGCA GCCAGCCGTA TCCGATGGCG CCGCTGCCGC TGTCGTTCAA CGAGCGCACC GTCAAGGACG CGCTCAACGC GCACGATCCG GCCCTGCGCG TGGTCACCGA GCCGGTGGCG CGCAACAGCC GCCCGTACGA CGGCCGACCG ACCTGCTGCG GCAACAACAA CTGCATGCCG ATCTGTCCGA TCGGGGCGAT GTACAACGGC ATCGTCCACG TGGAGAAGGC CGAGCAGGCC GGCGCGCGCC TGATCGAGAA CGCGGTGGTC TACAAGCTGG AGGTGGGCGC GGGCAAGCGC ATCGTCGCCG CGCACTACAA GGACCCGAAG GGCGTCGACC ACCGGGTCGA GGGCAAGTGG TTCGTGCTGG CCGCCAACGG CATCGAAACT CCCAAGCTGA TGCTGATGTC GACCGGCGCG GATTTTCCGA AGGGTGTGGG CAACCGTTCG GACATGGTCG GCCGCAACCT GATGGACCAC CCGGGCACCG GTGTGAGCTT CTACGCCGAC CGCAAGCTGT GGCCGGGCCG CGGCCCGCAG GAGATGACCT CGCTGATCGG CTTCCGCGAC GGACCGTTCC GCGCCACGCA GGCGGGCAAG AAGCTGCACC TGTCGAACAT CTCGCGCATC GAGCAGGAGA CCACGCGCAT CTTCAAGGCA GGCAAGCTGC TCAAGCCTGC CGAACTGGAC GCGCGCATTC GCGACCAGGC CGCGCGCTAC GTGCAGTTCG ACAGCTTCCA CGAGATCCTG CCGTTGCCCG AGAACCGCAT CGTGCCGAGC GCGACCGGGA CCGATGCGCT GGGCATTCCG CGTCCCGAGA TCACCTACCG CATCGACGAC TACGTCAAGC GCAGCGCCGT CCACACGCGC GAGGTCTATG CGACGGCGGC CAGGGTGCTG GGCGGCACCG ACGTGCAGTT CCACGACGAC TTCGCGCCCA ACAACCACAT CACCGGCGCG ACCATCATGG GGTCGGACCC GAAGGACTCC GTGGTCGACA AGGACTGCCG CACCTTCGAC CATCCCAACC TGTTCATCAG CAGCAGCGCG ACGATGCCGA CGGTCGGCAC CGTCAACGTG ACGCTGACCA TCGCGGCGCT GGCCCTGCGC ATTGCCGATC AGCTCAAGAA GGAGGCATGA
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Protein sequence | MAETRQAEQA DIVVVGSGVA GALVAYELAR AGKSVLMLEA GPRLPRWEIV ERFRNQADKM DFMAPYPSTP WAPHPEYGPD NNYLILKGEH KFDSQYIRAV GGTTWHWAAS TWRFLPNDFK LRSVYGIARD WPIQYDDLER YYGRAEAALG VWGPNDEELG SPRSQPYPMA PLPLSFNERT VKDALNAHDP ALRVVTEPVA RNSRPYDGRP TCCGNNNCMP ICPIGAMYNG IVHVEKAEQA GARLIENAVV YKLEVGAGKR IVAAHYKDPK GVDHRVEGKW FVLAANGIET PKLMLMSTGA DFPKGVGNRS DMVGRNLMDH PGTGVSFYAD RKLWPGRGPQ EMTSLIGFRD GPFRATQAGK KLHLSNISRI EQETTRIFKA GKLLKPAELD ARIRDQAARY VQFDSFHEIL PLPENRIVPS ATGTDALGIP RPEITYRIDD YVKRSAVHTR EVYATAARVL GGTDVQFHDD FAPNNHITGA TIMGSDPKDS VVDKDCRTFD HPNLFISSSA TMPTVGTVNV TLTIAALALR IADQLKKEA
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