| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0724 |
|---|
| Symbol | |
|---|
| ID | 1219530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 769503 |
|---|
| End bp | 773474 |
|---|
| Gene Length | 3972 bp |
|---|
| Protein Length | 1323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637237084 |
|---|
| Product | putative type-4 fimbrial biogenesis pily1-related signal peptide protein |
|---|
| Protein accession | NP_518845 |
|---|
| Protein GI | 17545443 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.542451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA TTCGTGGCTT GGTGGCCCTG GTGGCCTTGG GCTGGGTTGC CGTATTGGGA
GCAGCCAGTT CGGTGCCGAC CGTGGCAATC TCGACTGTGC CGCTCTACGG GCGCAGCCAG
AACATCCACC CCAACCTGAT GCTGTCGTTG TCGGTGGAAT TCCCGACCAC CGGTACAGCC
TATCGGGGAG CGTACAACAA CGCCAAAACC TACCTGGGCT ACTTCAACGC GACCAAGTGC
TACACCTACG ACGACACAAA CGGCTGGTTC GCCATTTCCG GTGACGCCAC GTCGGACACA
CACGAATGCT CCGGAAAGTT CTCGGGCAAC TTCATGAACT GGGCGGCCTC GTCAGCCATT
GACGAGTTCC GCATGGCGAT GACCGGCGGT GACCGTGTCG TCGACACCAC GACCCAGACT
GTGCTGCAGC GGGCGGTGCT GCGAAGCGAT TTCTTCCGTA ACGGCTCGTA CTTCCCGGTC
AAGACGATCA ACGCCAACAA TAACGGCAGC GCGCCAAGCG CGGTGACGCC GTTCAATTGG
TCGACGCTGT ATATCGCATC GTGCGGGAAC CACATTTTCT TTGCCGATCA GGATTACGGA
AACAACACAA GCTGCGCCAA TCCCGGCGGC TACGGTGATC AGTTCAACTG GTGGAACGGC
GCACTGACCC AGCGCCGCGC GTTCCGCGTG CAGGTTCAGG TTTGCGACAG CAATGAAGCG
ACCTCCCGCA CCGACCTGTG CTTCAACTAC AACGGCAACT ACAAGCCGGT CGGCCAGATG
CAGTTGAATG CCGACCGCAT GCGGTTTGCG GCATTCGGTT ACCTGAACGA CAGTAGCAAC
AATACGTGGG CAACGCAGAA CGAGCGCTAC GGCGGCGTGC TGCGCGCGCC GATGAAATAC
GTCGGTGCCA CGGCGGTGGA TAAAGACCTG AACGCGATCA CCAACTCCAC ACCGGAGTTC
GATACCTCTA CGGGCATTCT GAAGAAGAAC CCGCTGAACG CCACTGAAGG CGTCAGCGGC
GTGATCAACT ATCTGAACCA GTTCGGCCGC ACCAGCGTGC AGCTATCCGG CAGGTCCATG
GGCGATCTCG GGGGGCCGAC CGACAACCCG ACCGGCAACT ACAAGACCTT CGACCCGGTC
AGCGAGATGT TCTACGAGAG CATCCGCTAT CTGCAGTTCC ACCCGAACGG GCCGACCCCC
GAAGCGATCA GCGGGCTGCC GAACACCACG TATTCGGACA ACTTCCCGGT CTACACAAGC
TGGAGCGCGG ATCCCATTCT CAACCAGTGC CAACGCAACT ACGCGTTCCT GATCGGGGAT
ATCAACACCC ACGAAGATCA CTACATCCCG GGCAACAGGA AAACCGGCGA AGGTGATCCC
GCCCGCCCCG CCGACAGCTA CAGCGGCTTC AATGTGCGCG ACTGGACGAA CAAGGTCGGT
GCGCTCGAAA CCACCTACAA CCCTCCCCTC GGCGGGGCCA CCAGCCCGAT CACCAGCACC
TTGGGTGATG TCGATCACAG GTCTGCCCAT TTCGCGTCCT ACTATCTGGC CGGTACTGCC
TACTGGGCAC ACACCTACGG CTTCCGCCCC GACATGCCCA ATGCGCGCGT CACCACGTTC
GTCATCGACG TGAACGAAAA CGGCAATGGC ACGGTGGGTG ACAATCAGCG CAACAGCCAG
TTCTTCCTGG CGGCCAAGTA CGGCGGCTTC ATTGATGCCA ACAACGACGG GAATCCGCTC
CGGACCTACG GTCAGGATGG CTCCACCGTG GTCACGAACA ATAGCGAGTG GGAAGCCTCG
CCGACCGGCT CCAACGTCCC GTACAACTGG TTCCTGGGCG GTCAGCCGGA AGCGATGATC
GCTGCCATCA AGAAGATCTT TACGCAGATC ACCTCGTATG CCGGCACCCT GGCGGGCGTA
TCGCTGTCCA ACGGGCGCAT CACCACCACG TCCAGCACCA GCGGCGGCAC CTTCGTGTAT
ACGCCCGGCT TCGACCAGCA ATGGAACGGC CGCCTCGCTG CCTATGCGCT GACGCTCAGC
GGCACGACCG TCAGCACCTC GTCGACGCCG ACCTGGGAAG CCGGTGCACT GCTGACCACC
GCAATGCAGC AGAAGAACGG TCCCGCCAAC CGCGCCGTGT ACACGCTGAA CTCCACCTCG
CTCACCGGGG CACCGTTCAC CTGGACCGGC ATTTCCCCGG CACAGCAAAA GCTGTTGAGC
ACCAACCCCG ACCGGGGCAC GGCGGACAGC TACGGCCAGG CGCGCTTGGC GTACCTGCGT
GGCGACCGGA GCAAAGAGAT GAATACCGTT GCCAATACCG GCATGTTCCG CGCCCGCTCC
AGCATCCTGG GCGACATCAT CGGCTCGGCG CCGACATACG CCGGTACGCC GGCGGCGTCG
ATTGCCGATA CCGGGTACTC CACGTTCTAC AACACCTATA GCGGCCGCAC GCCGATGGTC
TATGTGGGCG CCAATGACGG CATGCTCCAT GCCTTCAACG CCAACACCGG CGCGGAAGTC
TTCGCCTATG TGCCGAACGC GGTGTTCTCG AACCTGAACC AGCTGACGTC CGTTTCCTAT
GCGCACCAGC TCTACGTCGA TGCCACCCCG AGCATCGGCG AAGCGCAGAT CAACGGCAAG
TGGCGTTCCG TTCTTGCCGG CGGCTTCGGC GGTGGTGCAC AAGGCGTCTA CGCGCTGGAC
ATCACCGACC CGACCGGCAC CAAGGAAGCG GCATTTTCCG CGTCGAACAT CCTGTGGGAG
TTCACGGACA AGGACGATGC GGACATGGGC AACGTGATGG GCTCGCCGAT CATGGTCAAG
CTCCGCACCG GCACGGACAG CTCCACCAAG CTGCCGATCT ACAAGTGGTT CGTCATGGTC
GCCAATGGCC TGAACTCGAA CCAGAACGAT GGCAACGCCA ACGCAAATGC CCCCGCGGCA
CTGTTCCTGC TGTCGCTCGA CAAGCCAGCC GGCGCAGCGT GGCAACTTGG CACGAACTAC
TACAAGATCG TTACGCCCGT GCCCAGCGCA ACGCCGACTT ACAACACGGC AAACGGCCTG
TCTGCGCCGG TAGCCATCGT CGGCGCCGCC GGCAGCGTCA CGCAGGCCTA TGCGGGCGAC
CTGCAGGGCA ACCTCTGGAA ATTCATCCTG TCCGGCGACT CGACGACCTG GAACGCCACC
TCCGCCCTGC CCGCCTACGG CGGCACGCCG GGCAAGCCGC TGTTCACGGC CACCGACAGC
TCCGGCCGCA GGCAGCCCAT CACGATCGCA CCCCGCGTCA TCTACGCGCC GGGCGGTTAC
ATGGTGCTGT TCGGCACGGG CAAGTACTAC GAGTCTGCCG ACACGAGTAC CCCCACCCAG
ACCAACAGCT TCTACGGTAT CTACGACGAC GACACGAACG CCAACTACGT GTCGAAGGGC
CGCGATCAGC TCAATACGGT CACGGCACTC GCCTCCAGCG ACGGCAAGTC GTACACCTTC
AGTTCGCCAG CCTATGCGCT GGGCTATACC GTCGGCCGCA AACCCGGCTG GAAGCTGGAT
TTCCCGGATC AGACCGAAAA GCAGGTCACG GCGATCACGG TCTCCGATGG CGCGGTGTTC
TTCAATTCCT TGACCGGCAC GGACGGCTGC GGCACCAGCG GCAGCAGCCG CAGCTATGCC
CTCAAGGCTT TGACCGGTCT GCCGCTGTCC GGCAACCTCT CCGGTTACCA ATCCACCACG
GGAGTGCTGG GTGCGCCTAC GCTGATCATT GTTTCCGTCA CGAGTACCAC CCGGGATACC
GTGGGCGGCA GCGTTGAGAC GAAAACCAAG ATCGTTCTGT CCCCGGGCGC ACAGGGCCTG
ACGGTCGGCT CGATGGGCGG ATCGTCGACA CCGGGCTCGA CCTCGACCAC CGAATCGGGA
GTCGCCTCGC AGCAGTTGAA TTCCCGCATC GGCTGGCGCG AAGTCCGCAA CTTCGTCCTG
CAGACGAACT GA
|
|---|
| Protein sequence | MKIIRGLVAL VALGWVAVLG AASSVPTVAI STVPLYGRSQ NIHPNLMLSL SVEFPTTGTA
YRGAYNNAKT YLGYFNATKC YTYDDTNGWF AISGDATSDT HECSGKFSGN FMNWAASSAI
DEFRMAMTGG DRVVDTTTQT VLQRAVLRSD FFRNGSYFPV KTINANNNGS APSAVTPFNW
STLYIASCGN HIFFADQDYG NNTSCANPGG YGDQFNWWNG ALTQRRAFRV QVQVCDSNEA
TSRTDLCFNY NGNYKPVGQM QLNADRMRFA AFGYLNDSSN NTWATQNERY GGVLRAPMKY
VGATAVDKDL NAITNSTPEF DTSTGILKKN PLNATEGVSG VINYLNQFGR TSVQLSGRSM
GDLGGPTDNP TGNYKTFDPV SEMFYESIRY LQFHPNGPTP EAISGLPNTT YSDNFPVYTS
WSADPILNQC QRNYAFLIGD INTHEDHYIP GNRKTGEGDP ARPADSYSGF NVRDWTNKVG
ALETTYNPPL GGATSPITST LGDVDHRSAH FASYYLAGTA YWAHTYGFRP DMPNARVTTF
VIDVNENGNG TVGDNQRNSQ FFLAAKYGGF IDANNDGNPL RTYGQDGSTV VTNNSEWEAS
PTGSNVPYNW FLGGQPEAMI AAIKKIFTQI TSYAGTLAGV SLSNGRITTT SSTSGGTFVY
TPGFDQQWNG RLAAYALTLS GTTVSTSSTP TWEAGALLTT AMQQKNGPAN RAVYTLNSTS
LTGAPFTWTG ISPAQQKLLS TNPDRGTADS YGQARLAYLR GDRSKEMNTV ANTGMFRARS
SILGDIIGSA PTYAGTPAAS IADTGYSTFY NTYSGRTPMV YVGANDGMLH AFNANTGAEV
FAYVPNAVFS NLNQLTSVSY AHQLYVDATP SIGEAQINGK WRSVLAGGFG GGAQGVYALD
ITDPTGTKEA AFSASNILWE FTDKDDADMG NVMGSPIMVK LRTGTDSSTK LPIYKWFVMV
ANGLNSNQND GNANANAPAA LFLLSLDKPA GAAWQLGTNY YKIVTPVPSA TPTYNTANGL
SAPVAIVGAA GSVTQAYAGD LQGNLWKFIL SGDSTTWNAT SALPAYGGTP GKPLFTATDS
SGRRQPITIA PRVIYAPGGY MVLFGTGKYY ESADTSTPTQ TNSFYGIYDD DTNANYVSKG
RDQLNTVTAL ASSDGKSYTF SSPAYALGYT VGRKPGWKLD FPDQTEKQVT AITVSDGAVF
FNSLTGTDGC GTSGSSRSYA LKALTGLPLS GNLSGYQSTT GVLGAPTLII VSVTSTTRDT
VGGSVETKTK IVLSPGAQGL TVGSMGGSST PGSTSTTESG VASQQLNSRI GWREVRNFVL
QTN
|
|---|
| |