Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0723 |
Symbol | |
ID | 1219529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 769004 |
End bp | 769489 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637237083 |
Product | type-4 fimbrial pilin-like transmembrane protein |
Protein accession | NP_518844 |
Protein GI | 17545442 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4968] Tfp pilus assembly protein PilE |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCACAC ACCGTTCGCC CCCCCTGCCC CATCAGCGTG GCTTCACGCT GATCGAGCTG ATGATTGTCG TGATCGTCGT CGCCATCCTG TCGACGATCG CGTATCCGTC CTATACGCAG TTCGTGCAGA AAAGCCGGCG TACGCAGGCC AAGGCCGCGC TGATGGAAAA CATGCAGCTG TTCGAGCGGC ACTTCGCGCA AGCGAACACG TATGCCGCCA GCTCCACTGA CCTGACCCAC GCGTGGAACG GGTTCAGGAC ATATTCGGGC GATGCGCAGA CCAGCACCAG CTACCAGATC TCGGCCGTGG GCTGCTCCGG CAGCGCGAAC GTGGACCAGT GCGTCGAACT GCAAGCACAG CCACCCAACA ACGGCAAGGA CGATCCGACT TGCGGCACGC TGGTCTATCG CAGCACGGGT GAAAAGCTAA ACATCCTTTT GGGGAAATCC GTCCCCGAGT CGCCCACCAC GACCGGATGC TGGTAA
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Protein sequence | MRTHRSPPLP HQRGFTLIEL MIVVIVVAIL STIAYPSYTQ FVQKSRRTQA KAALMENMQL FERHFAQANT YAASSTDLTH AWNGFRTYSG DAQTSTSYQI SAVGCSGSAN VDQCVELQAQ PPNNGKDDPT CGTLVYRSTG EKLNILLGKS VPESPTTTGC W
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