| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0715 |
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| Symbol | ribD |
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| ID | 1219521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 762512 |
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| End bp | 763624 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637237075 |
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| Product | diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase |
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| Protein accession | NP_518836 |
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| Protein GI | 17545434 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCCG ACTTCGATCA CGCCATGATG CAGCGCGCCC TGGCGCTGGC GGAAAACGGG
CTCTTCACCA CCACGCCCAA TCCCCGCGTC GGCTGCGTAC TGGTCCGGGA CGACACCGTC
ATCGGCGAAG GCTTCACCCA GCCGGCCGGC CAGGACCACG CCGAGATCCA GGCCATCAAG
GATGCCCAGG CCCGCGGCCA CGACGTGCGC GGCGCCACGG CCTATGTGAC GCTGGAGCCG
TGCAGCCATT TCGGTCGCAC CCCCCCCTGC GCGGATCGCC TGGTCGAAGC CGGCATCGCG
CGCGTGGTGG CGGCCATGGA GGACCCGAAC CCGACCGTCT CGGGACGCGG CCTGCAGAGA
CTGCGCGAAG CCGGCATCGA CGTCCGGTGC GGCCTGCTGG AGCGCGAGGC GCGCGAACTG
AACATCGGCT TCGTCTCGCG CATGACGCGC GGCACGCCGT GGGTCCGTGT CAAGGTGGGG
GCGTCGCTGG ACGGCCGCAC GGCGCTGGAC AACGGCATCA GCCAGTGGAT CACGGAGGCC
GAGGCGCGCG CCGATGGCCA TCGCTGGCGC GCGCGCGCCT GCGCCATCCT CACCGGCATC
GGCACCGTGC GCGAGGACAA CCCGCGCCTG ACCGTACGCG CCATTCCCAC GCCGCGCCAG
CCGCGCCGCA TCCTGATCGA TTCGGGACTC GACGTGCCGC TCGACGCGCA CATCCTGACC
GCCGACGGCC ACCATGAGCC AACGCTGATC TTCGCCGCCC GCCCCGAAGC CGGCCGCATG
CGCGCGCTGG CCGAGCATGG CGCCGAGGTG ATCCTGCTGC CCAATGCCGA CGGCAAGGTC
GACCTGCCCG CCATGCTGCG CGAGCTCGGC CGCCGCGAGA TCAACGAACT GCACGTCGAG
GCCGGCTACA AGCTCAACGG CTCGCTGCTG CGCGAAGGGC TGGTCGACGA GATCCTGGTC
TATCTGGCGC CCAAGGTGCT GGGGTCGGGC CAGGGCATGT TCAACCTGGG GCCGCTGCAA
TCGCTGGAAG GCGCGGCGGC ATTCTTCTTT CACGACATCA CGCGCGTCGG CGGCGATCTC
CGCATCCTGG CGCGCCGCAA CCCGACGGAT TGA
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| Protein sequence | MFSDFDHAMM QRALALAENG LFTTTPNPRV GCVLVRDDTV IGEGFTQPAG QDHAEIQAIK
DAQARGHDVR GATAYVTLEP CSHFGRTPPC ADRLVEAGIA RVVAAMEDPN PTVSGRGLQR
LREAGIDVRC GLLEREAREL NIGFVSRMTR GTPWVRVKVG ASLDGRTALD NGISQWITEA
EARADGHRWR ARACAILTGI GTVREDNPRL TVRAIPTPRQ PRRILIDSGL DVPLDAHILT
ADGHHEPTLI FAARPEAGRM RALAEHGAEV ILLPNADGKV DLPAMLRELG RREINELHVE
AGYKLNGSLL REGLVDEILV YLAPKVLGSG QGMFNLGPLQ SLEGAAAFFF HDITRVGGDL
RILARRNPTD
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