| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0692 |
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| Symbol | rfaC1 |
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| ID | 1219497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 740615 |
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| End bp | 741613 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637237051 |
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| Product | lipopolysaccharide heptosyltransferase protein |
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| Protein accession | NP_518813 |
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| Protein GI | 17545411 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
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| TIGRFAM ID | [TIGR02193] lipopolysaccharide heptosyltransferase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00185807 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGTGC TGATCGTCAA GGTGTCGTCG CTTGGCGATG TGGTGCACTG CACGCCGGTG
GTGGCGGACA TCCTGCGCGC GCATCCTGGC GCCGAGATCG ACTGGGTTGT CGAGGAAGGG
TTCGCGGGCA TCGTGCGCAT CGTGCGCGGG GTGCAGGACG TGATCCCGTT TGCGCTGCGG
CGCTGGCGCA AGTCGCTGGC GTCCGGCGCG ACTTGGGGCG AGATGGCGGC ATTCCGCCGG
GCCCTGCGCG CCAAGCCGTA CGACGTGGTG CTCGACACGC AGGGCCTGAT CAAGACCGCG
CTGGTCGCCG CGCAGGCCCG CCTGGCGCCG AACGGGTTTG TCGCCGGGCT GGGCAATCGC
ACCGACGGCG CAGGCTACGA GCCGCTGGCT CGGCTGTTCT ACCAGCGCGA GGTCCACATG
GAGCCGCGCG TGCACGTGGT CGAGCGCTCG CGCCGCATGG TGGCTGAGGC TCTCGGCTAC
GCCGTCCCCG AGACGATCGA CTTCGGCCTG CAGCCGCCGG CCAGCCTGCC GTTCGCGCTG
CCGCGCCCAT ATGTGGCGCT GGTGCATGCC ACCTCGCGCG CCGACAAGGG CTGGCCGCAG
GACGCCTGGG TCGATGTCGC CCGCGCGCTG CTGGCCCGCG ATTACGCCCT GGCGCTGCCC
TGGGGCAGCG AAACCGAGCG CCGCACCAGC GAGGCCATCC GCGAAGCCAT CGTGGCCGCG
GTACCGGGCA CACTCGGGCG GATCGTGATC CCGCCGCGCA TGTCGCTGCC CGACGTGACC
GCCTTCCTCG ACCAGTCGAC CGCGGTGGTC GGGGTCGACA CCGGCCTGGT GCACATCGCC
GCGGCGATGT GCAAGCCGAC CGTGGCGCTC TACAACTTTT CCACGTCGTG GCGCACCGGC
GGCTACTGGA CGCCCAAGGT CCACGACCTC GGCTGCGCCG AGGCCCATCC GACCAGCGCG
CAGGCGCTCG ATGCGCTGCG CGCGCTGGGT GTGCTCTGA
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| Protein sequence | MRVLIVKVSS LGDVVHCTPV VADILRAHPG AEIDWVVEEG FAGIVRIVRG VQDVIPFALR
RWRKSLASGA TWGEMAAFRR ALRAKPYDVV LDTQGLIKTA LVAAQARLAP NGFVAGLGNR
TDGAGYEPLA RLFYQREVHM EPRVHVVERS RRMVAEALGY AVPETIDFGL QPPASLPFAL
PRPYVALVHA TSRADKGWPQ DAWVDVARAL LARDYALALP WGSETERRTS EAIREAIVAA
VPGTLGRIVI PPRMSLPDVT AFLDQSTAVV GVDTGLVHIA AAMCKPTVAL YNFSTSWRTG
GYWTPKVHDL GCAEAHPTSA QALDALRALG VL
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