Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0656 |
Symbol | cpaB |
ID | 1219461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 703843 |
End bp | 704709 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637237015 |
Product | pilus assembly transmembrane protein |
Protein accession | NP_518777 |
Protein GI | 17545375 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3745] Flp pilus assembly protein CpaB |
TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.360259 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAACC TGCGCATTCT TTCCATGCTG CTGATCGCCA CCATCGCCGG CCTGGCCGCC ATGCTCTTCG CATCGCGCTG GCTGATCCAG CAAGGCAACA GCGGCACCAC CAAGGTGGCC GTGGCCGCCG TGGACGTCAA CCTGGGCCAG CGCCTGTCGC CAGAGTTCAT CCGACTGGTC GACTGGCCTG CGGCCAGCCT GCCGCCGGGC GCGATCTCGG ACGAGCACGC GATCGACGGC CGGGTCACCC GGACCAGCCT GTCGCCCGGC GAACCGGTGC TGGAATCCAA GCTCACGCCG GTCGGCACCA AGGGCGGGCT GTCGGCGGTG ATCGCCGACG GCAAGCGCGC CATCACCGTG CGCGTGAACG ACGTGGTGGG CGTGGCCGGC TTCGCGCTGC CGGGCAGCTA CGTCGACATC ATCGTCAACA CGCAGCAGGA AACGCCGGAC GGCAAGCCCG CCAAGGGTGC GCAGGCCGAC CGCGAAGAGC ATTCGATCTC CAAGATCGTG CTCGAGAAGA TCCTGGTGCT GGCCGTGGCT CAGGAGGTCA ACCGCGACGA GACCAAGCCC AAGGTCGTCA ACGCCGTCAC GCTGGAAGTG ACGCCGGATG AGGCCGAGAA GCTCGACCTG GCGCGCAGCG TGGGCACGCT TTCGCTGGTG CTGCGCAATC AGGTGGATCC GCGTCCGGTC GATACCGCCG GCGCGACCAA GAGCACGCTG CTCAAGGAAC CGGTGGTGGC CACCGTGGCC GTGCCGGTCG TGAAGACCGT GCAAGTCGTC AAGCGCGTCG CCGCCGTGGA GAGAAAGGCC ACCGGCACGT GCATCGGCGT CATCAGCGGC ATGCAGCACA ACCAGGAATG CTTCTGA
|
Protein sequence | MKNLRILSML LIATIAGLAA MLFASRWLIQ QGNSGTTKVA VAAVDVNLGQ RLSPEFIRLV DWPAASLPPG AISDEHAIDG RVTRTSLSPG EPVLESKLTP VGTKGGLSAV IADGKRAITV RVNDVVGVAG FALPGSYVDI IVNTQQETPD GKPAKGAQAD REEHSISKIV LEKILVLAVA QEVNRDETKP KVVNAVTLEV TPDEAEKLDL ARSVGTLSLV LRNQVDPRPV DTAGATKSTL LKEPVVATVA VPVVKTVQVV KRVAAVERKA TGTCIGVISG MQHNQECF
|
| |