Gene RSc0653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0653 
SymbolcpaE1 
ID1219458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp700268 
End bp701461 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content70% 
IMG OID637237012 
Productputative pilus assembly protein 
Protein accessionNP_518774 
Protein GI17545372 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4963] Flp pilus assembly protein, ATPase CpaE 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.868615 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.200622 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAGA TCGCCGTAGT ATCCGCCGAC GAGTCGCACC TGCAGTTTCT CGCGGGACTG 
GTCACCCAGG CCGCCAACCA TGTCGTGCAG CGCGCCCGCA CCACGCCGTC GCAGGCGCTG
GCCCAGCCCG GGCTGACGCT GGGCACGGAC CTGCTGGTGC TGGAAGCCGG CAACTTCACC
GCGGACGACA TCGACCAGTT GCGCCGCCTC ACCGCCGAGC AGCAGGACAC CCTGTGCATG
CTGCTGACCG AGAACCCCTC GGCCGAGCTG CTGATGCGCG CCATGCGCGC GGGCGTGCAG
TGCGTGCTGC CGTGGCCGCC CGATGCGCAG GAGTTTCGCG ACGAGGTGCA GCGCTGCACC
AGCCACGCGC TCTCCGGCCA TCGCAGCGAG GCCAAGGTGG TCTCCTTCCT GTCATGCAAG
GGCGGCAGCG GCACCACGTT CACGGCGGCC AACTTCGGCT ACACGCTGGC CGCCAGGCAG
GGCAAGCGGG TCCTGCTGAT CGACCTCAGC CAGCAGTACG GCGACGCGGC CTTCCTGGTG
ACCGACCAGG CACCGCCGGC CACGCTGGCC AGCGTCTGCC AGCAGATCGA GCGCCTGGAC
CCCGCCCTGC TCGACGCCTG CCTGACCCAC GTCTGCCCCA ATTTCGACGT GCTGCCCGCC
GCCGGCGATC CGGTCAAGGC CGGCGAGATC AAGGCGATGC ACCTGGAGCG CATCCTGACG
CTCATCAGCC CGCTGTATGA CGTGGTGATC TTCGACGTCG GCCAGGACAT CAACCCGGCC
TCGATCGTGG TGCTGGACCA CAGCACCGTG ATCTACCCGG TGCTGCAGCT GACCCTGCCC
CATCTGCGCG CGGGGCGGCG GCTGCTGGAC ATCTGCCACT CGCTCGGCTA CCACGCCGAG
CGCCTGCGGC TGGTGATCAA CCGGTACGAG AAGCACACGC CGGTCGACCT GCACACGCTG
GAAAACGCCT TCGGCCTGCA CGCCGCCCAT CTGCTGCCGA ACGACCGGGG CCCCGTGCGC
GATGCGAGCA GCCAGGGCGT GCCGGTGCTG CAACTGGCCG AGCACAGCCC GATCGCGCGC
GCGCTGGCCG ACATGGCGAG CCAGCTCTAT CCCGACACCG CGCCGCGCCG CGACAGCCTG
CTGCGCAAGT TGTTCGGACA AGGCGGCCAA GTGCCCGCAA CGGCGCGCGC ATGA
 
Protein sequence
MAKIAVVSAD ESHLQFLAGL VTQAANHVVQ RARTTPSQAL AQPGLTLGTD LLVLEAGNFT 
ADDIDQLRRL TAEQQDTLCM LLTENPSAEL LMRAMRAGVQ CVLPWPPDAQ EFRDEVQRCT
SHALSGHRSE AKVVSFLSCK GGSGTTFTAA NFGYTLAARQ GKRVLLIDLS QQYGDAAFLV
TDQAPPATLA SVCQQIERLD PALLDACLTH VCPNFDVLPA AGDPVKAGEI KAMHLERILT
LISPLYDVVI FDVGQDINPA SIVVLDHSTV IYPVLQLTLP HLRAGRRLLD ICHSLGYHAE
RLRLVINRYE KHTPVDLHTL ENAFGLHAAH LLPNDRGPVR DASSQGVPVL QLAEHSPIAR
ALADMASQLY PDTAPRRDSL LRKLFGQGGQ VPATARA