Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0653 |
Symbol | cpaE1 |
ID | 1219458 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 700268 |
End bp | 701461 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637237012 |
Product | putative pilus assembly protein |
Protein accession | NP_518774 |
Protein GI | 17545372 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4963] Flp pilus assembly protein, ATPase CpaE |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.868615 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.200622 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAGA TCGCCGTAGT ATCCGCCGAC GAGTCGCACC TGCAGTTTCT CGCGGGACTG GTCACCCAGG CCGCCAACCA TGTCGTGCAG CGCGCCCGCA CCACGCCGTC GCAGGCGCTG GCCCAGCCCG GGCTGACGCT GGGCACGGAC CTGCTGGTGC TGGAAGCCGG CAACTTCACC GCGGACGACA TCGACCAGTT GCGCCGCCTC ACCGCCGAGC AGCAGGACAC CCTGTGCATG CTGCTGACCG AGAACCCCTC GGCCGAGCTG CTGATGCGCG CCATGCGCGC GGGCGTGCAG TGCGTGCTGC CGTGGCCGCC CGATGCGCAG GAGTTTCGCG ACGAGGTGCA GCGCTGCACC AGCCACGCGC TCTCCGGCCA TCGCAGCGAG GCCAAGGTGG TCTCCTTCCT GTCATGCAAG GGCGGCAGCG GCACCACGTT CACGGCGGCC AACTTCGGCT ACACGCTGGC CGCCAGGCAG GGCAAGCGGG TCCTGCTGAT CGACCTCAGC CAGCAGTACG GCGACGCGGC CTTCCTGGTG ACCGACCAGG CACCGCCGGC CACGCTGGCC AGCGTCTGCC AGCAGATCGA GCGCCTGGAC CCCGCCCTGC TCGACGCCTG CCTGACCCAC GTCTGCCCCA ATTTCGACGT GCTGCCCGCC GCCGGCGATC CGGTCAAGGC CGGCGAGATC AAGGCGATGC ACCTGGAGCG CATCCTGACG CTCATCAGCC CGCTGTATGA CGTGGTGATC TTCGACGTCG GCCAGGACAT CAACCCGGCC TCGATCGTGG TGCTGGACCA CAGCACCGTG ATCTACCCGG TGCTGCAGCT GACCCTGCCC CATCTGCGCG CGGGGCGGCG GCTGCTGGAC ATCTGCCACT CGCTCGGCTA CCACGCCGAG CGCCTGCGGC TGGTGATCAA CCGGTACGAG AAGCACACGC CGGTCGACCT GCACACGCTG GAAAACGCCT TCGGCCTGCA CGCCGCCCAT CTGCTGCCGA ACGACCGGGG CCCCGTGCGC GATGCGAGCA GCCAGGGCGT GCCGGTGCTG CAACTGGCCG AGCACAGCCC GATCGCGCGC GCGCTGGCCG ACATGGCGAG CCAGCTCTAT CCCGACACCG CGCCGCGCCG CGACAGCCTG CTGCGCAAGT TGTTCGGACA AGGCGGCCAA GTGCCCGCAA CGGCGCGCGC ATGA
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Protein sequence | MAKIAVVSAD ESHLQFLAGL VTQAANHVVQ RARTTPSQAL AQPGLTLGTD LLVLEAGNFT ADDIDQLRRL TAEQQDTLCM LLTENPSAEL LMRAMRAGVQ CVLPWPPDAQ EFRDEVQRCT SHALSGHRSE AKVVSFLSCK GGSGTTFTAA NFGYTLAARQ GKRVLLIDLS QQYGDAAFLV TDQAPPATLA SVCQQIERLD PALLDACLTH VCPNFDVLPA AGDPVKAGEI KAMHLERILT LISPLYDVVI FDVGQDINPA SIVVLDHSTV IYPVLQLTLP HLRAGRRLLD ICHSLGYHAE RLRLVINRYE KHTPVDLHTL ENAFGLHAAH LLPNDRGPVR DASSQGVPVL QLAEHSPIAR ALADMASQLY PDTAPRRDSL LRKLFGQGGQ VPATARA
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