Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0652 |
Symbol | cpaF1 |
ID | 1219457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 698866 |
End bp | 700227 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637237011 |
Product | secretion ATPase protein |
Protein accession | NP_518773 |
Protein GI | 17545371 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.199713 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATTGC GAGAACAACT CTTCCAGCAG GCGGGCGAAT CGATGCCGCA GCGCGTCGCG CATGCCAACG GCTGCGGCGG CGCCAGCCCG GCCTACCAGC AACTGGCCAT CGAGATCCAC CAGACCATCA TCGACCGCGT GGAGCTGAGC CGGCTGCAGC AGCTGACCCC GGAGCAGGTC CGGCGCGAAC TGGCGCAGCT GGTCGAGCGC ATCGTCGAGG AAGGCAACCA TCCGGTCAAC GAGGCCGAGC GCCACCGCCT GGTCTCGGAC GTGCAGGACG AAATGCTCGG CTACGGCCCG CTGGAGCCGC TGCTGGCCGA CCCCACCATC TCCGACATCC TCGTCAATAC CTGCAAGCAG GTCTACGTGG AGCGCCGCGG CAAGCTGGAG CTGACCGACG TGACCTTCCA CAACGACGCG CACCTGATGC GCGTGATCGA GAAGATGGTT TCGCGCATGG GCCGGCGCAT CGACGAGTCG AGCCCGATGG TGGATGCGCG CCTGCCCGAC GGCTCGCGCA TCAACGCCAT CATTCCGCCC TCGGCCATCG ACGGGCCGCT GCTGTCGATC CGGCGATTCG CGGTCAACCC GCTCACGGTC AAGGACCTGA TCGAGTACAA CACCCTCACC CCGCAGATGG CGCAACTGCT GGAGGCGATG GTCCAGGCCA AGCTCAACAT CCTGATCTCG GGCGGCACGG GCAGCGGCAA GACCACGCTG CTCAACATCC TCTCGGGCTA CATTCCGGTC GATGAGCGCG TGGTCACCAT CGAAGATGCG GCCGAACTGC AGCTGCGCCA GCCGCACGTG CTGCGGCTGG AGACCCGCCC GCCCAACATC GAGGGCCGCG GCGAGATCAC CCAGCGCTCG CTGGTGAAGA ACGCCCTGCG CATGCGCCCC GACCGCATCA TCCTGGGCGA AGTGCGCGGC GCCGAGGCGC TCGACATGCT CCACGCGATG AACACCGGCC ACGAGGGGTC GCTCGCCACC ATCCACGCCA ACACCCCGCG CGACGCACTC ACGCGGCTGG AGAACATGGT CAGCATGTCG GGCCTGCAGC TGCCCACCAA GACCATGCGG CAGCAGATCA CCTCGGCGCT CTCGGTGGTG GTGCAGGTCA CGCGCCTGAC CGACGGGCGA CGCAAGCTGG TCAGCGTGCA GGAGATCACC GGCATGGAAG GCGACATCGT CAACATGCAG GAGATCTTCA CCTTCCGGCG CCGCGGCGTG GACCGCGATG GCCGCATCAA GGGCCATTTC TGCGCCACCG GCGTGCGGCC CAAGTTCTCG GAGCGCCTGC AGTCGTACGG CATCCAGCTG CCGGAAGCGC TGTTCGACCC CACCGTGATG CACGAAGTCT AG
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Protein sequence | MSLREQLFQQ AGESMPQRVA HANGCGGASP AYQQLAIEIH QTIIDRVELS RLQQLTPEQV RRELAQLVER IVEEGNHPVN EAERHRLVSD VQDEMLGYGP LEPLLADPTI SDILVNTCKQ VYVERRGKLE LTDVTFHNDA HLMRVIEKMV SRMGRRIDES SPMVDARLPD GSRINAIIPP SAIDGPLLSI RRFAVNPLTV KDLIEYNTLT PQMAQLLEAM VQAKLNILIS GGTGSGKTTL LNILSGYIPV DERVVTIEDA AELQLRQPHV LRLETRPPNI EGRGEITQRS LVKNALRMRP DRIILGEVRG AEALDMLHAM NTGHEGSLAT IHANTPRDAL TRLENMVSMS GLQLPTKTMR QQITSALSVV VQVTRLTDGR RKLVSVQEIT GMEGDIVNMQ EIFTFRRRGV DRDGRIKGHF CATGVRPKFS ERLQSYGIQL PEALFDPTVM HEV
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