Gene RSc0652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0652 
SymbolcpaF1 
ID1219457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp698866 
End bp700227 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content67% 
IMG OID637237011 
Productsecretion ATPase protein 
Protein accessionNP_518773 
Protein GI17545371 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.199713 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATTGC GAGAACAACT CTTCCAGCAG GCGGGCGAAT CGATGCCGCA GCGCGTCGCG 
CATGCCAACG GCTGCGGCGG CGCCAGCCCG GCCTACCAGC AACTGGCCAT CGAGATCCAC
CAGACCATCA TCGACCGCGT GGAGCTGAGC CGGCTGCAGC AGCTGACCCC GGAGCAGGTC
CGGCGCGAAC TGGCGCAGCT GGTCGAGCGC ATCGTCGAGG AAGGCAACCA TCCGGTCAAC
GAGGCCGAGC GCCACCGCCT GGTCTCGGAC GTGCAGGACG AAATGCTCGG CTACGGCCCG
CTGGAGCCGC TGCTGGCCGA CCCCACCATC TCCGACATCC TCGTCAATAC CTGCAAGCAG
GTCTACGTGG AGCGCCGCGG CAAGCTGGAG CTGACCGACG TGACCTTCCA CAACGACGCG
CACCTGATGC GCGTGATCGA GAAGATGGTT TCGCGCATGG GCCGGCGCAT CGACGAGTCG
AGCCCGATGG TGGATGCGCG CCTGCCCGAC GGCTCGCGCA TCAACGCCAT CATTCCGCCC
TCGGCCATCG ACGGGCCGCT GCTGTCGATC CGGCGATTCG CGGTCAACCC GCTCACGGTC
AAGGACCTGA TCGAGTACAA CACCCTCACC CCGCAGATGG CGCAACTGCT GGAGGCGATG
GTCCAGGCCA AGCTCAACAT CCTGATCTCG GGCGGCACGG GCAGCGGCAA GACCACGCTG
CTCAACATCC TCTCGGGCTA CATTCCGGTC GATGAGCGCG TGGTCACCAT CGAAGATGCG
GCCGAACTGC AGCTGCGCCA GCCGCACGTG CTGCGGCTGG AGACCCGCCC GCCCAACATC
GAGGGCCGCG GCGAGATCAC CCAGCGCTCG CTGGTGAAGA ACGCCCTGCG CATGCGCCCC
GACCGCATCA TCCTGGGCGA AGTGCGCGGC GCCGAGGCGC TCGACATGCT CCACGCGATG
AACACCGGCC ACGAGGGGTC GCTCGCCACC ATCCACGCCA ACACCCCGCG CGACGCACTC
ACGCGGCTGG AGAACATGGT CAGCATGTCG GGCCTGCAGC TGCCCACCAA GACCATGCGG
CAGCAGATCA CCTCGGCGCT CTCGGTGGTG GTGCAGGTCA CGCGCCTGAC CGACGGGCGA
CGCAAGCTGG TCAGCGTGCA GGAGATCACC GGCATGGAAG GCGACATCGT CAACATGCAG
GAGATCTTCA CCTTCCGGCG CCGCGGCGTG GACCGCGATG GCCGCATCAA GGGCCATTTC
TGCGCCACCG GCGTGCGGCC CAAGTTCTCG GAGCGCCTGC AGTCGTACGG CATCCAGCTG
CCGGAAGCGC TGTTCGACCC CACCGTGATG CACGAAGTCT AG
 
Protein sequence
MSLREQLFQQ AGESMPQRVA HANGCGGASP AYQQLAIEIH QTIIDRVELS RLQQLTPEQV 
RRELAQLVER IVEEGNHPVN EAERHRLVSD VQDEMLGYGP LEPLLADPTI SDILVNTCKQ
VYVERRGKLE LTDVTFHNDA HLMRVIEKMV SRMGRRIDES SPMVDARLPD GSRINAIIPP
SAIDGPLLSI RRFAVNPLTV KDLIEYNTLT PQMAQLLEAM VQAKLNILIS GGTGSGKTTL
LNILSGYIPV DERVVTIEDA AELQLRQPHV LRLETRPPNI EGRGEITQRS LVKNALRMRP
DRIILGEVRG AEALDMLHAM NTGHEGSLAT IHANTPRDAL TRLENMVSMS GLQLPTKTMR
QQITSALSVV VQVTRLTDGR RKLVSVQEIT GMEGDIVNMQ EIFTFRRRGV DRDGRIKGHF
CATGVRPKFS ERLQSYGIQL PEALFDPTVM HEV