Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0601 |
Symbol | |
ID | 1219406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 646622 |
End bp | 648265 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637236960 |
Product | hypothetical protein |
Protein accession | NP_518722 |
Protein GI | 17545320 |
COG category | [R] General function prediction only |
COG ID | [COG3008] Paraquat-inducible protein B |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.184325 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGATC CCGTTGATAC CCGCGACATC CCCCCGCCCC GCCGCATGAA GCGCAAGCGC TGGCTGCCCT CGCTGATCTG GCTGGTGCCG ATCGTGGCCC TGGCCGTGGG GGCCACGCTG ATGACGCGCG TGATCCTGGC GCGCGGCGCG CAGATCACCG TCACCTTCAG TTCGGCCGAG GGCATCGAGG CGGGCAAGAC GCGCGTCAAG TACAAGAGCG TGGACATCGG CGTGGTGAAA TCCGTCGGCC TGACCGACGA CCGCTCCGGC GCCGTCGTGC TGATCGAGCT GACGCGCGAC GGCAAGGCCT TCGCGGTGGC GGACACGCGC CTCTGGGTGG TGCGCCCGCG CGTGGCGGCA GGCAGCATCT CGGGGCTGGG CACGCTGCTG TCGGGCGCCT ACATCGGCGT GGACGGCGGC CGCGCCAAGG AGCACAAGTC CGTCTTCAAG GGGCTCGACA CGCCGCCGGC CATCTACGCC GATACGCCCG GCAGGCAGTT CACGCTGCAC GCCAACGACC TGGGCTCGCT CGACACCGGC GCGCCGGTGT ACTTCCGCCG CGTGCGCGTC GGCCAGGTCA CCAGCTACGA CATCGACGCC GACGGCAAGG GTGTGACGCT GCACATCTTC GTCAACGCGC CGTTCGACCG GTTCGTCACG CGCAGCTCGC GCTTCTGGAA CGCCAGCGGC ATCGACCTCA AGCTCGACGC CAGCGGCCTG AAGGTCGACA TGCAATCGCT GCTGACGGTG GCGCTGGGCG GCATTGCCTT CCAGTCGCCG GAGGACGCCG ACCGCGACCC CGCCCCGCAG AACACCGAGT TCGAGCTGGT GCGCAACGAG GCGATGGCCC TGAAGGACCC CGAGCACGTC TCGCAGACCG TGGTGATGTA CTTCCACCGC TCGCTGCGCG GCCTGACGGT GGGCGCGCCG GTGGAGTTCA AGGGCATCAA CGTGGGCGAG ATCAAGTCGA TCGGCATCCA TTACAGCAAG GAGCGCCACG AGTTCGTGCT GCCGGTGACG GCGGTGCTGT ACCCGACGCG CTTCGGCATG GACGTCCGCG ACGACACCGC CGCGCACGCC ACCGAGGACA CCCGCGCCCA GTTCGACACG CTGATCCGCA ACGGCATGCG CGCGCAGCTC AAGAGCGCCA GCCTGCTGAC CGGGCAGCAG TTCGTGCAGC TCGACTTCGT CGAGCCGGCC GACCGCGGCA AGACGCCGCC ACGCTTCGGC CTGCGCGAGC GCGGCGGCGC CTACGTTTTC CCGACCGCCG ACAATCCGAC CGACGACATC GAGGCCCAGA TCGCCGGCAT CGTGAAGAAG CTCAACAAGG TGCCGTTCGA GCAGATCGGC CAGGACGTGC ACCGCGCCCT GAACTCGCTC GACGCGACGC TCAAGCAGAC CGAGCAGCTG GCCAAGACCG TCAACAACGA CCTGGCGCCG CAGATGAAGG ACACGCTGGC CGAGGCCCGC CGCACGCTGG AGACCGCGCG CCAGACCTTC TCCGAGGATG CCCCGCTGCA GCGCAACGCG CGCGACACAC TGGAGCAGGT GGCCAAGGCC GCCGCCTCCG TGCGCGTGCT GACCGACTAC CTGGACCGAC ACCCCGAGGC CCTGATCCGG GGCAAGGCAA AGGACGCCCA ATGA
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Protein sequence | MTDPVDTRDI PPPRRMKRKR WLPSLIWLVP IVALAVGATL MTRVILARGA QITVTFSSAE GIEAGKTRVK YKSVDIGVVK SVGLTDDRSG AVVLIELTRD GKAFAVADTR LWVVRPRVAA GSISGLGTLL SGAYIGVDGG RAKEHKSVFK GLDTPPAIYA DTPGRQFTLH ANDLGSLDTG APVYFRRVRV GQVTSYDIDA DGKGVTLHIF VNAPFDRFVT RSSRFWNASG IDLKLDASGL KVDMQSLLTV ALGGIAFQSP EDADRDPAPQ NTEFELVRNE AMALKDPEHV SQTVVMYFHR SLRGLTVGAP VEFKGINVGE IKSIGIHYSK ERHEFVLPVT AVLYPTRFGM DVRDDTAAHA TEDTRAQFDT LIRNGMRAQL KSASLLTGQQ FVQLDFVEPA DRGKTPPRFG LRERGGAYVF PTADNPTDDI EAQIAGIVKK LNKVPFEQIG QDVHRALNSL DATLKQTEQL AKTVNNDLAP QMKDTLAEAR RTLETARQTF SEDAPLQRNA RDTLEQVAKA AASVRVLTDY LDRHPEALIR GKAKDAQ
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