| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0588 |
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| Symbol | |
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| ID | 1219393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 631995 |
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| End bp | 634706 |
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| Gene Length | 2712 bp |
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| Protein Length | 903 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637236947 |
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| Product | hypothetical protein |
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| Protein accession | NP_518709 |
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| Protein GI | 17545307 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCCA CTTCCACCGG GCGGCCCGGG TCACCCGGTA CTCCAGAGGA GTCCGCGGCC
CGGCCGTTGC CGCTCGCCGA CGATCGCTAC GAGGCGCTGG TCCGGCAGAT GCCCGACGCG
CTCTACATCG TGGCGGATGA CATCATCGTT TTCATCAACG AGGCGGGCGT GCGGCTGCTC
GGCGCGGACA GCGCGAGCGA CATCGTCGGG CGCGAGCTGG ACGCATTCGT CCACGAGGAC
TCGGTGCAGC TGGCGCGCCA GCGCCGCGAG TGGATGATCG AGCACGGCGC GGGCCTGCCG
CCGGTCGAGC AGACGCTGCT GCGCTGCGAC GGCACGCCGG TGGACGTGGA GATCCTGTCC
GCGCCGGTGC AGCTCGGCTG GCGCACCGCC GTCCAGGTGG TCGCGCGCGA CATCCGCCAG
CGCAAGCATG CCGAGCAGGC GCTGCGCGAA TCCGAGGCCA ATTACCGGGC GCTCGCCGCC
GAGACCGCGC GGGCGAAGGA GCTGCTGCGC TGCGAAAAGA CCGTGCTCGA AATGAGCTCG
CGCAATGTGC CGCTGCCGGA CCTGCTGGCC GAGGTGTGCC ACATCGTCGA TACCCTGCTC
GACGACGGCG CGATGTGCTC CATCCTGCTG TGCGGCGACG GCGAGCACGT GACGCTGGCG
GCGGCGCCGT CGCTGCCGTC GGCGCTGAGC AAGGCGCTGG TCGGGCTGAC GATCGGCCCG
GCCGCCGGGT CGTGCGGCAC GGCCATGTTC CGCAATGCCC GCGTGGTGGT CGAAGACATC
GAGACCGATC CGCTATGGGA CGACTACCGC GCGCTGGTTG TCCCGATGGG CTTGCGGGCC
TGCTGGTCGA CGCCGATCCG CGGCGACAAC GCGCAGATGA TCGGCGCGGT GGGCGTCTAC
TACGACACGC CGCGCGCGCC CACGCGGCCG GCGATGCAAC TGCTGGACGA CATCACCGAC
ATCGTCGGCG TGGCGGTCCA GAAGGCCCAC ATCGCGCGCG AGCTGCAGGA AAGCGAAGAG
CGCTACCGCC TGGCCGTCGA CAACCTGACC GAGGGCATCC TCGTGCAGGC CGCGGACGGC
ACCATCCTCG CGTGCAACCC GAGCGCGCGG CGCATCCTGC GCGCCGGCGA CCAGTCGCCG
GTGGGCGCGA GCCACCTGAC GCTGATGCGC CGCTCGCTGC GCGAGGACGG CAGCGAGATC
CCCTTCCTGG AGCGGCCCAC GCGCGTGGTG CTGACCACGG GGCGGCCGCT GCTGGGGCTG
ACCATCGGCC TGGAGCTGAT CAACGGCGAC GTGGTGTGGG TGTATGAGAA CGTGCTGCCC
ATCATGCGTC CCGGCGACGC CACGCCCAGC GCCGTGCTGA TCTCGTTCAA CGACATCGGC
CCGGCGCGCG CGGCCGAGCA GCAGCTCAAG TTCCTCGCCC AGCGCGATGC GCTCACGGGT
TTGTACAACC GTGCCTACTT CCTGCAGCGC ATGCAGGCCG TGCTCGACGA GGCGGTCACC
GACGGCCGGC AGGCGGCGGT GTTGTTCCTC GACCTGGACG GCTTCAAGAA GGTCAATGAC
ACCGCGGGGC ACGAGGCCGG CGACCACCTG CTGCGCATCG TGGCGCAGCG GCTGTCGGCC
TGCGTGCGCC AGACCGACAC GCTGGCGCGG CTGGGCGGCG ACGAATTCGT CGTGCTGCTC
GACCAGGTGC GCTCGCTGGC GGAGGCCGAG CAACTGGCCC GGCGCATCAT CGCGGCCATC
GCGCAGCCGT TCTCGACCGG CGGCACCGAG TATTACCTGG GCGCCTCGAT CGGCATCGCG
GTGCATCCCG ATCATGGCCA GGACGCGGCC ACGCTGCTGC GCTGCGCCGA CGCCGCCATG
TACAACGCCA AGCAGAACGG CCGCAACCAG CACCGCGTCT TCACCGCGCA GCTCTCGCAG
CGGGCGCAGC GGCGCTTCCA GCTGGAGCAG CACCTGCGGC GCGCCCTGTC GGCGCAGGAG
CTGTCGCTGC GCTTCCAGCC CATCGTCGAT GCCGCCTCGA TGGGCATCGT CGGCGCGGAG
GTGCTGCTGC GCTGGCACAG CGCCGAGCTG GGCGAGGTGT CGCCCGCCGA GTTCATTCCC
GTGGCCGAGG ATGCCGGGCT CATCATCGCC ATCGGCGAAT GGGTGCTGGA GCAGGCCTGC
CGCCAGGCGG CCCACTGGCG CCGGACCTGC GCGCCGGATT TCTTCATCGC CGTGAACCTG
TCGCCGCGCC AGTTCGGCGA CGCCCTGGTG CCCATGCTGT CGCGCTGCCT GGCCGAGAGC
GGGCTGCCCG CGTGCGCGCT GGAGATGGAG ATCACCGAAG GGCTGCTGAT GCGCGACACC
GCCGCGGTGA TGCCGGTGCT CGACGCGCTG ACGGCGCTGG GGGTGCGCAT CTCCATCGAC
GATTTCGGCA CGGGGTATTC GTCGCTGTCG TACCTGCAGC GCTTTCCGAT CGACAACCTC
AAGGTGGACC GCTCGTTCGT CTCGGGCATC CCGCGCCACC GGGATTCGGT GGTGATCTCG
CGCGCGGTGG TGGCGATGGC GGCGTCGCTC GATATGACCG TCACCGCCGA GGGCGTGGAG
ACGCTCGCGC AGGCCGAATT CCTGCAGGCG GCCGGCTGCG ACAAGCTGCA GGGCTTCCTG
TTCGGCGCAC CCATGTCGGC TGCCGCCTAC GAGGAACGCC TGCGCCGCGC GCAGTTGGGC
GGACCGGCGT AG
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| Protein sequence | MDATSTGRPG SPGTPEESAA RPLPLADDRY EALVRQMPDA LYIVADDIIV FINEAGVRLL
GADSASDIVG RELDAFVHED SVQLARQRRE WMIEHGAGLP PVEQTLLRCD GTPVDVEILS
APVQLGWRTA VQVVARDIRQ RKHAEQALRE SEANYRALAA ETARAKELLR CEKTVLEMSS
RNVPLPDLLA EVCHIVDTLL DDGAMCSILL CGDGEHVTLA AAPSLPSALS KALVGLTIGP
AAGSCGTAMF RNARVVVEDI ETDPLWDDYR ALVVPMGLRA CWSTPIRGDN AQMIGAVGVY
YDTPRAPTRP AMQLLDDITD IVGVAVQKAH IARELQESEE RYRLAVDNLT EGILVQAADG
TILACNPSAR RILRAGDQSP VGASHLTLMR RSLREDGSEI PFLERPTRVV LTTGRPLLGL
TIGLELINGD VVWVYENVLP IMRPGDATPS AVLISFNDIG PARAAEQQLK FLAQRDALTG
LYNRAYFLQR MQAVLDEAVT DGRQAAVLFL DLDGFKKVND TAGHEAGDHL LRIVAQRLSA
CVRQTDTLAR LGGDEFVVLL DQVRSLAEAE QLARRIIAAI AQPFSTGGTE YYLGASIGIA
VHPDHGQDAA TLLRCADAAM YNAKQNGRNQ HRVFTAQLSQ RAQRRFQLEQ HLRRALSAQE
LSLRFQPIVD AASMGIVGAE VLLRWHSAEL GEVSPAEFIP VAEDAGLIIA IGEWVLEQAC
RQAAHWRRTC APDFFIAVNL SPRQFGDALV PMLSRCLAES GLPACALEME ITEGLLMRDT
AAVMPVLDAL TALGVRISID DFGTGYSSLS YLQRFPIDNL KVDRSFVSGI PRHRDSVVIS
RAVVAMAASL DMTVTAEGVE TLAQAEFLQA AGCDKLQGFL FGAPMSAAAY EERLRRAQLG
GPA
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