Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0558 |
Symbol | pilA |
ID | 1219363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 602739 |
End bp | 603245 |
Gene Length | 507 bp |
Protein Length | 168 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637236917 |
Product | type 4 fimbrial pilin signal peptide protein |
Protein accession | NP_518679 |
Protein GI | 17545277 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.791178 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCGA TGCGTCATCT CAACAAGCGT GTCCAGAAGG GTTTCACGCT GATCGAACTG ATGATCGTGG TCGCGATCGT CGGTATTCTG GCTGCGATTG CCATTCCGGC CTATCAGGAC TACACGGTTC GTGCACGCGT GACGGAAGGT CTGTCGCTGG CTGCGCAAGC CAAGGCGCTG GTGTCGGAAA ACGCTGCCAA TGCACAGTCT GACCTGTCGG TGGGTTCGTC GGTGTTCACG CCCACCAAGA ACGTTGCCAA CTTGACGATT GCTGGTACGG GTACTGTTCC GGGTCAGATC ACCGTCACCT ATACGACGGC AGCTGGCGGC GGCACGCTGG CTCTGGTTCC GACTGCGGCT GGTACTGCAC TGCCGGTTAG CTCGGCACCG TCGGGCCCGA TCATGTGGAC CTGCTACGCT CAGAATAAGG CTCAGGCTGC TAGCAGCGTT GCTCCGAGCG GTACGATGTC GCTGGCAGCG AAGTATGCTC CGGCAGAATG CCGCTAA
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Protein sequence | MKSMRHLNKR VQKGFTLIEL MIVVAIVGIL AAIAIPAYQD YTVRARVTEG LSLAAQAKAL VSENAANAQS DLSVGSSVFT PTKNVANLTI AGTGTVPGQI TVTYTTAAGG GTLALVPTAA GTALPVSSAP SGPIMWTCYA QNKAQAASSV APSGTMSLAA KYAPAECR
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