Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0510 |
Symbol | |
ID | 1219314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 546019 |
End bp | 548124 |
Gene Length | 2106 bp |
Protein Length | 701 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637236868 |
Product | hypothetical protein |
Protein accession | NP_518631 |
Protein GI | 17545229 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0522945 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGCCG GCAGCTACCA CCCCCTTCTT GTCCTGTTCT CACTGTGCGT GGCGATCCTG GCGTCGTACA CGGCGCTGGA CATGGCCGGC CGCATCGCCA TGGCGCGCGG GCGCGCCGCG CAGTGGTGGC TCGCCGGCGG CGCCTGCGCC ATGGGGCTGG GCATCTGGTC GATGCATTTC GTGGGCATGC TGGCCTTCCG CCTGCCGATT CCGCTCGGCT ATGACACGTG GATCACCCTG GCCTCGCTGC TGATCGCCAT CGCCCTGTCG GCTTTTGCGC TGTGGCTGGT CTGCCAGCGC CGGCTGCCCT GGCCGCGGCT GGCCGGCGGC GCGCTGCTGA TGGGCGCGGG CGTGGCCAGC ATGCATTACA CCGGCATGGC GGCCATGCGC ATGTCGCCGG GGATCCTCTA CGATCCGGCC CTCTTCTGCC TGTCGGTGGT CATCGCCATG CTGGCGTCGG GCGCGGCGCT GTGGATCGCG TTCCGCCTGC GGCGCCAGTC GCGCCGCAGG CGGGCGATGC GCGCCGGCGC CGCGGTGGTG ATGGGCCTGG CCATCGTCGG CATGCACTAC ACCGGCATGG CGGCGGCCGG CTTCCCGCTG GGCAGCATTT GCGGTGCGGC GCGCGGCGGC GCCAGCGCCG AATGGTTGGC CCTGGTCATC ATCGTGGTGA CGCTCGCGGT GCTGGCGATG GCGCTGCTCA TTTCGGTGTT GGACCTGCGC ATGGAGGCGC GCACGGCGGT GCTGGCGACG TCGCTGGCCA AGGCCAACCG CGAGCTGGCC TACCTGGCGC TGCACGACAG CCTGACCAAG CTGTCCAACC GCCTGCTGCT CGAAGACCGC CTGGACCAGG CGATCCAGGC GGCCGGCAGC AATCGCGGCA GCTTCGCGCT GATGTTCCTC GACCTGGACG GCTTCAAGGC AATCAACGAC GTCTATGGCC ATCACGCGGG CGATCTGCTG CTGGCCGACG TGGCGCGGCG CATCGTGGCG TGCGTGCGCC AGCAGGACAC GGTGGCGCGG GTCGGCGGCG ACGAGTTCGT CGTGCTGGCC GGCGTGGGCG AGCCCGCGGA CGCCGGGACC CTGGCCGACG CCCTGCTGGC CGCCGTGCGC GCGCCGTTCC TGGTGGACGG GCACGCACTG CGGGTGTCGA CCAGCATCGG CATCGCGCTC TATCCGGACG ACGGCGCCGG CCAGCACGAT CTGCTCACCA ATGCCGACGC GGCGATGTAT CACGCCAAGG GCATGGGCCG CGATACGTAC TGCTTCTTCG AGGCGTCGAT GAACACCAAC GTCCATCAGC AGCTGCAGCT GGTGCAGGAC CTGCGCCTGG CGCTGGAGCG GCACGAGCTG GTGCTGCACT ACCAGCCCAA GTTCAGCGCG CCGCATGGCC CCGTGGTCGG GGTCGAGGCG CTGGTGCGCT GGCAGCATCC CGAGCGCGGG CTGGTGCAGC CCGATGCCTT CATTCCGCTG GCGGAGAAGA CCGGCCTGAT CGTGCCGCTC GGGGCCTGGG TGCTCGACGA GGCGTGCCGG CAGATGGCGC AATGGCGCCG GGAAGGGCAC GCGCAATGGT CCATCGCCGT CAACCTTTCG GCGGTGCAGT TCGCCCATGC GGCGCTGGTC GACACCGTGC GCGACACGCT TGCCCGCCAT GCGCTGGAGC CGCAAGGCCT GACGCTGGAG ATCACCGAAT CGACCGCGAT GCGCGACGCC GACGCCAGCC TGCACATCCT GCAGCAGCTG CATGCGATGG GCGTGCGCAT CTCGATCGAC GATTTCGGCA CCGGCTATTC GAGCCTGCTG TATCTGAAGC GCCTGCCGGC CAGCGAACTG AAGATCGATC GCGGGTTCGT GCGCGACCTG GCGCACGACT CCGAGGATGC GGCCATCGTC TCGGCCGTCG TGGCGCTGGG CCAGACCCTG AACCTGCGCA TCGTGGCCGA AGGCGTGGAG ACCGAGGCGC AGCAGGCGTT CCTGACGCGC CTCGGTTGCC ATGCTCTGCA GGGCAACCTG CTGGGCCGGC CGATGACGGC GCAGGCGGTG CTCGAGGCCG CCGGGCTGGC GCAGGCGCAG GGCCTCCAGG CGATGGCGGC CGAAGCGCGG GCCTAG
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Protein sequence | MLAGSYHPLL VLFSLCVAIL ASYTALDMAG RIAMARGRAA QWWLAGGACA MGLGIWSMHF VGMLAFRLPI PLGYDTWITL ASLLIAIALS AFALWLVCQR RLPWPRLAGG ALLMGAGVAS MHYTGMAAMR MSPGILYDPA LFCLSVVIAM LASGAALWIA FRLRRQSRRR RAMRAGAAVV MGLAIVGMHY TGMAAAGFPL GSICGAARGG ASAEWLALVI IVVTLAVLAM ALLISVLDLR MEARTAVLAT SLAKANRELA YLALHDSLTK LSNRLLLEDR LDQAIQAAGS NRGSFALMFL DLDGFKAIND VYGHHAGDLL LADVARRIVA CVRQQDTVAR VGGDEFVVLA GVGEPADAGT LADALLAAVR APFLVDGHAL RVSTSIGIAL YPDDGAGQHD LLTNADAAMY HAKGMGRDTY CFFEASMNTN VHQQLQLVQD LRLALERHEL VLHYQPKFSA PHGPVVGVEA LVRWQHPERG LVQPDAFIPL AEKTGLIVPL GAWVLDEACR QMAQWRREGH AQWSIAVNLS AVQFAHAALV DTVRDTLARH ALEPQGLTLE ITESTAMRDA DASLHILQQL HAMGVRISID DFGTGYSSLL YLKRLPASEL KIDRGFVRDL AHDSEDAAIV SAVVALGQTL NLRIVAEGVE TEAQQAFLTR LGCHALQGNL LGRPMTAQAV LEAAGLAQAQ GLQAMAAEAR A
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