| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0418 |
|---|
| Symbol | |
|---|
| ID | 1219222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 445016 |
|---|
| End bp | 445636 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637236776 |
|---|
| Product | transport transmembrane protein |
|---|
| Protein accession | NP_518539 |
|---|
| Protein GI | 17545137 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.475588 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.302245 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAATG TGCTGCTGTT CCTGCTGTCT TCCGTCGCCA TCACGGTGAT GCCGGGGCCG
GACAACCTGC AGGTGATCGC GCGTGGCGCG AGCCAGGGCC GCAAGGCCGG GCTGGCGGCG
GCGGCCGGGT TTGCCTCGGG CTGCCTGTTC CATACGACGC TGGCGGCGCT GGGGCTGGCG
GCGGTGCTGC AGTCCGCGCC GGCGGCGTTC CAGGCGATCC GCTGGCTGGG CGCGGCCTAC
CTGGTCTGGC TGGGCGTGCA GGCGCTGCGC AGCAAGGGCG GCGTCGGGCC GTCGGTGAGC
GCGCAGGCGG CGGCGCCCGA TCTGTGGCAG GTGTTCCGCC AGAGCGTGCT GGCCAACATG
CTCAACCCCA AGGTGACGCT GTTCTTCGTG GTGTTCCTGC CGCAGTTCGT CGACGCGCAG
GCCGGTCATG CGGCGCTGCA GATGCTGCTG CTGGGCGGGG TGTTCATGGC GCAGACCATC
GTGGTCTTCG GCCTGTACGG CTGGTGCGCG GCGGCGCTGG GCGGCTGGAT GCGCCGCACG
CCGCGCGCGT CGCTGTGGCT GGATCGCGTG AGCGGCTGCA TTTTCATCGG GCTGGGGCTG
CGGGTCGCGC TCACCAAGTG A
|
|---|
| Protein sequence | MPNVLLFLLS SVAITVMPGP DNLQVIARGA SQGRKAGLAA AAGFASGCLF HTTLAALGLA
AVLQSAPAAF QAIRWLGAAY LVWLGVQALR SKGGVGPSVS AQAAAPDLWQ VFRQSVLANM
LNPKVTLFFV VFLPQFVDAQ AGHAALQMLL LGGVFMAQTI VVFGLYGWCA AALGGWMRRT
PRASLWLDRV SGCIFIGLGL RVALTK
|
|---|
| |