Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0408 |
Symbol | rpoN1 |
ID | 1219212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 435559 |
End bp | 437058 |
Gene Length | 1500 bp |
Protein Length | 499 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637236766 |
Product | RNA polymerase factor sigma-54 |
Protein accession | NP_518529 |
Protein GI | 17545127 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.236863 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGT CGCTCCAGCT CCGTCTCTCC CAGCATCTGG CGCTCACGCC ACAACTGCAG CAGTCGATCC GGCTGCTGCA GTTGTCGACC ATCGAGCTGC AACAGGAAGT CGAGCAGGCG CTGACCGAGA ACCCGCTGCT CGAGCGCGAG AACGAGTGGC TCGACACCTC CGCGCGCATC GGCGCCGACG GCTCGGTCAA CGCCCTGCAG AGCAGCAGCG CCACCCCGCT GCCGACCGAA TCGCCGCCGC CCGCCGCCAA CGGCGCGGAC CATGCCGACA CGGCCGAGGC ATCGTACGAA AACGGCAGCG ATTTCGACAG CGACTACGGC ACCGAGCGGT CCGACTGGAG CCTCGACGAC TTCGCGCGCA AACCCCAGTC CGACGAAGAC GACCGCGCGC CGATGCAGCT GCGCGAGGCC GAACCCACGC AGCGCGAATT CCTGATGGAA CAACTCGCGC CGCTCAAGCT GTCCCCGCGC GACAAGGGCC TCGTCATCTT CCTGATCGAA TCGCTGGACG ACGAAGGCTA CCTGACCGGC TCGCTCGATG AGATCCTCGC CGACCTGCCG GCCGAACTCG AGGTCGAGCT CGACGAATTG CAGGCCGCGC TGCGGATGCT GCAGAGCTTC GATCCGGCCG GCATCGGTGC GCGCTCGGCG GCCGAATGCC TGACGCTGCA GCTGCAGCGC CTGGACTCCC CGGCCAAGCC GCTGGCGCTG ACCATCGTCA ACCAGCATCT CGAACTGCTC GCCGCGCGCG ACTACACGCG GCTGAAGAAA GCGCTGTCCG TCGATGATGG CGAGCTGAAG GCCGCGCATG AGCTGATCCG CTCGCTGGCG CCCTTTCCTG GCCACGCCTT CGGGCGGGCC GAGGCCGACT TCGTCGTGCC CGACGTGGTG GTGCGCAAGA CCGCCGCCGG CTGGATGGCA CAGCTGAACC CCGACGTGAT GCCACGCCTG CGCATCAACG ACATGTATGC GCAGATCCTG CGCAGCAGCC GTGGCGAATC GGGTGCCGCC AACCTGCAGC AGAAGCTGCA GGAAGCGCGC TGGCTGATCA AAAATATCCA GCAACGCTTC GACACCATCC TGCGTGTCTC GCAAGCAATT GTCGAACGTC AAAAGAGCTT TTTCACGCAC GGTGAAATCG CCATGCGCCC CTTGGTTTTG CGGGAAATAG CCGATACACT GGGTCTACAC GAGTCCACGA TCTCCCGTGT GACGACCAAC AAATACATGG CAACCCCCAT GGGGACCTTC GAGCTGAAGT ACTTCTTCGG CAGCCATGTA TCGACGGAAA CCGGCGGGGC CGCGTCATCC ACCGCGATAC GCGCGCTCAT CAAGCAACTT GTAGGAGCCG AAGACCCGAA GAATCCTCTG TCCGATAGCA GAATTGCCGA GCTGTTAGGC GAACAAGGAT TCGTGGTGGC CCGTCGGACG GTGGCCAAGT ACCGCGAAGC CCTCAAGATC CCAGCAGTGA ATCTGCGCAA GTCTTTATAG
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Protein sequence | MKQSLQLRLS QHLALTPQLQ QSIRLLQLST IELQQEVEQA LTENPLLERE NEWLDTSARI GADGSVNALQ SSSATPLPTE SPPPAANGAD HADTAEASYE NGSDFDSDYG TERSDWSLDD FARKPQSDED DRAPMQLREA EPTQREFLME QLAPLKLSPR DKGLVIFLIE SLDDEGYLTG SLDEILADLP AELEVELDEL QAALRMLQSF DPAGIGARSA AECLTLQLQR LDSPAKPLAL TIVNQHLELL AARDYTRLKK ALSVDDGELK AAHELIRSLA PFPGHAFGRA EADFVVPDVV VRKTAAGWMA QLNPDVMPRL RINDMYAQIL RSSRGESGAA NLQQKLQEAR WLIKNIQQRF DTILRVSQAI VERQKSFFTH GEIAMRPLVL REIADTLGLH ESTISRVTTN KYMATPMGTF ELKYFFGSHV STETGGAASS TAIRALIKQL VGAEDPKNPL SDSRIAELLG EQGFVVARRT VAKYREALKI PAVNLRKSL
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