Gene RSc0408 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0408 
SymbolrpoN1 
ID1219212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp435559 
End bp437058 
Gene Length1500 bp 
Protein Length499 aa 
Translation table11 
GC content64% 
IMG OID637236766 
ProductRNA polymerase factor sigma-54 
Protein accessionNP_518529 
Protein GI17545127 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.236863 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAGT CGCTCCAGCT CCGTCTCTCC CAGCATCTGG CGCTCACGCC ACAACTGCAG 
CAGTCGATCC GGCTGCTGCA GTTGTCGACC ATCGAGCTGC AACAGGAAGT CGAGCAGGCG
CTGACCGAGA ACCCGCTGCT CGAGCGCGAG AACGAGTGGC TCGACACCTC CGCGCGCATC
GGCGCCGACG GCTCGGTCAA CGCCCTGCAG AGCAGCAGCG CCACCCCGCT GCCGACCGAA
TCGCCGCCGC CCGCCGCCAA CGGCGCGGAC CATGCCGACA CGGCCGAGGC ATCGTACGAA
AACGGCAGCG ATTTCGACAG CGACTACGGC ACCGAGCGGT CCGACTGGAG CCTCGACGAC
TTCGCGCGCA AACCCCAGTC CGACGAAGAC GACCGCGCGC CGATGCAGCT GCGCGAGGCC
GAACCCACGC AGCGCGAATT CCTGATGGAA CAACTCGCGC CGCTCAAGCT GTCCCCGCGC
GACAAGGGCC TCGTCATCTT CCTGATCGAA TCGCTGGACG ACGAAGGCTA CCTGACCGGC
TCGCTCGATG AGATCCTCGC CGACCTGCCG GCCGAACTCG AGGTCGAGCT CGACGAATTG
CAGGCCGCGC TGCGGATGCT GCAGAGCTTC GATCCGGCCG GCATCGGTGC GCGCTCGGCG
GCCGAATGCC TGACGCTGCA GCTGCAGCGC CTGGACTCCC CGGCCAAGCC GCTGGCGCTG
ACCATCGTCA ACCAGCATCT CGAACTGCTC GCCGCGCGCG ACTACACGCG GCTGAAGAAA
GCGCTGTCCG TCGATGATGG CGAGCTGAAG GCCGCGCATG AGCTGATCCG CTCGCTGGCG
CCCTTTCCTG GCCACGCCTT CGGGCGGGCC GAGGCCGACT TCGTCGTGCC CGACGTGGTG
GTGCGCAAGA CCGCCGCCGG CTGGATGGCA CAGCTGAACC CCGACGTGAT GCCACGCCTG
CGCATCAACG ACATGTATGC GCAGATCCTG CGCAGCAGCC GTGGCGAATC GGGTGCCGCC
AACCTGCAGC AGAAGCTGCA GGAAGCGCGC TGGCTGATCA AAAATATCCA GCAACGCTTC
GACACCATCC TGCGTGTCTC GCAAGCAATT GTCGAACGTC AAAAGAGCTT TTTCACGCAC
GGTGAAATCG CCATGCGCCC CTTGGTTTTG CGGGAAATAG CCGATACACT GGGTCTACAC
GAGTCCACGA TCTCCCGTGT GACGACCAAC AAATACATGG CAACCCCCAT GGGGACCTTC
GAGCTGAAGT ACTTCTTCGG CAGCCATGTA TCGACGGAAA CCGGCGGGGC CGCGTCATCC
ACCGCGATAC GCGCGCTCAT CAAGCAACTT GTAGGAGCCG AAGACCCGAA GAATCCTCTG
TCCGATAGCA GAATTGCCGA GCTGTTAGGC GAACAAGGAT TCGTGGTGGC CCGTCGGACG
GTGGCCAAGT ACCGCGAAGC CCTCAAGATC CCAGCAGTGA ATCTGCGCAA GTCTTTATAG
 
Protein sequence
MKQSLQLRLS QHLALTPQLQ QSIRLLQLST IELQQEVEQA LTENPLLERE NEWLDTSARI 
GADGSVNALQ SSSATPLPTE SPPPAANGAD HADTAEASYE NGSDFDSDYG TERSDWSLDD
FARKPQSDED DRAPMQLREA EPTQREFLME QLAPLKLSPR DKGLVIFLIE SLDDEGYLTG
SLDEILADLP AELEVELDEL QAALRMLQSF DPAGIGARSA AECLTLQLQR LDSPAKPLAL
TIVNQHLELL AARDYTRLKK ALSVDDGELK AAHELIRSLA PFPGHAFGRA EADFVVPDVV
VRKTAAGWMA QLNPDVMPRL RINDMYAQIL RSSRGESGAA NLQQKLQEAR WLIKNIQQRF
DTILRVSQAI VERQKSFFTH GEIAMRPLVL REIADTLGLH ESTISRVTTN KYMATPMGTF
ELKYFFGSHV STETGGAASS TAIRALIKQL VGAEDPKNPL SDSRIAELLG EQGFVVARRT
VAKYREALKI PAVNLRKSL