Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0396 |
Symbol | ipk |
ID | 1219200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 423179 |
End bp | 424048 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637236754 |
Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
Protein accession | NP_518517 |
Protein GI | 17545115 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000394449 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCTCCG CGCCCACCGA ACTGCGCGAC TGTCCCGCGC CCGCCAAGCT CAACCTGTTC CTGCACGTGG TCGGCCGCCG GCCGGACGGC TATCACCTGC TGCAGACCGT GTTCCAGCTG ATCGACTGGT GCGACACCCT GCACTTCGGC CGCCGCGCCG ACGGCCGCTT GGTGCGCACC ACCGACATCC CCGGCGTTCC GGCGGACGAA GACCTGGTCA TCCGCGCCGC CCGCCTGCTG CAGGCGGAGA CCGGCTGCGC CTACGGCGCC GACATCGCGC TGGAAAAGCG CCTGCCGATG GGCGGCGGCA TCGGCGGCGG CTCGTCCGAT GCGGCGACGG CGCTGCTGGC GCTCAACCGC CTGTGGGGGC TCGACCTGCC GCGCGCGAAG CTGATGTCGC TGGGCCTGCG CCTGGGCGCT GACGTGCCTT TCTTCCTGTT CGGCCAGAAC GCATTTGCCG AGGGCATCGG TGAAGCGCTG ACACCGATCG CGCTGCCGCC GGCGACCTTT GTGGTCATCC ATCCGCGCGT CCATGTCCCC ACCCCCGAAA TTTTTTCCGA TGAGGGGTTG ACACGTAACA CTCCCCTCAC CATAATTACG GACTTTCCTG ACCAACAAAT TGTTTTCGCT TACGGTCGCA ACGATCTGCA AGCGGTGGCG GAAAGGAAAT ACGGCGAAAT CGCCCGAGCT CTTGCCTGGC TGCGTCAGTT CAGCCCACTG GCAAGGATGA CCGGATCCGG CGCCTGCGTG TTCGCACCGT TTGATCGTGC AGAACAGGCA CAAGCGGTGG CGGATCAGGT GCCTTCCGAA TGGGAAGGTC GGTGTGCGGC AGGTCTGACG CATCACCCGC TCGCGATGTT CGCTGTATAA
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Protein sequence | MPSAPTELRD CPAPAKLNLF LHVVGRRPDG YHLLQTVFQL IDWCDTLHFG RRADGRLVRT TDIPGVPADE DLVIRAARLL QAETGCAYGA DIALEKRLPM GGGIGGGSSD AATALLALNR LWGLDLPRAK LMSLGLRLGA DVPFFLFGQN AFAEGIGEAL TPIALPPATF VVIHPRVHVP TPEIFSDEGL TRNTPLTIIT DFPDQQIVFA YGRNDLQAVA ERKYGEIARA LAWLRQFSPL ARMTGSGACV FAPFDRAEQA QAVADQVPSE WEGRCAAGLT HHPLAMFAV
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