Gene RSc0394 details

Gene Information

• Locus tag: RSc0394
• Symbol: rplY
• ID: 1219197
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: -
• Start bp: 421246
• End bp: 421866
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637236751
• Product: 50S ribosomal protein L25/general stress protein Ctc
• Protein accession: NP_518515
• Protein GI: 17545113
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1825] Ribosomal protein L25 (general stress protein Ctc)
• TIGRFAM ID: [TIGR00731] ribosomal protein L25, Ctc-form

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.761444
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 21
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAAGTTG TCGCTTTCGA GCGTAGCGTT CAGGGTACGG GTGCGAGCCG CCGCCTGCGC 
AATGCTGGCA AGACCCCGGC CATCATCTAC GGTGCCGGCG CAGAGCCGAA GCTGATCGAA 
CTCGATCACA ATGCGCTGTA CCACGCGCTG AAGAAGGAAG CCTTCCACTC GTCGATCCTC 
GACATCGAAG TGGCCGGCAA GGTGGAAAAG GCGCTGCTGC GCGATTTCCA ACTGCACCCG 
TTCAAGCAGC TGGTCCTGCA CGTCGACTTC CAGCGCGTGT CGGCCACGGA AAAGATCCAC 
GTCAAGGTGC CGCTGCACTT CCTGAACCAG GAAACCGCGC CGGGCGTGAA GCTGGGCCAT 
GGCATCGTCA ACCACATCCT GAACGACGTT GAAGTGTCGT GCCTGCCGGC CGACCTGCCG 
GAGTTCATCG AAGTGGACCT GGGCAACCTG GAAATCGGCC AGACCCTGCA CATCTCCGAC 
CTGAAGCTGC CGAAGGGCGT GACCATCGTG ACGCACGGTG GCGACGAAAA CCCGGCCGTG 
GCCAACATCA GCGTGCCGGC TGGCGAAGTG TCCGCCGCTG CCGCCGAGTC GGCTGGCGAA 
GGCGACAAGC CCGCCGCCTA A 

 

Protein sequence

MKVVAFERSV QGTGASRRLR NAGKTPAIIY GAGAEPKLIE LDHNALYHAL KKEAFHSSIL 
DIEVAGKVEK ALLRDFQLHP FKQLVLHVDF QRVSATEKIH VKVPLHFLNQ ETAPGVKLGH 
GIVNHILNDV EVSCLPADLP EFIEVDLGNL EIGQTLHISD LKLPKGVTIV THGGDENPAV 
ANISVPAGEV SAAAAESAGE GDKPAA