| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0387 |
|---|
| Symbol | |
|---|
| ID | 1219190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 415124 |
|---|
| End bp | 416629 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637236744 |
|---|
| Product | putative zinc protease protein |
|---|
| Protein accession | NP_518508 |
|---|
| Protein GI | 17545106 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0612] Predicted Zn-dependent peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCTT TCCCGCAATC CGTTTCAAAT TCCGCCCGGA CCGGCCTGCG CTGGGCGGGC
ATCACTCTGG CGGTCGCCCT GCTGGCCGGC GAGGCCGGTG CGCAGGCGCC GGCCCCGATG
GCGGCGCGCC AGGCCGCCGC GCTCACCGGC GCCAAGGTCG GCACCAGCCA GGCCGATACA
CACGAATACC GGCTCGCCAA CGGCCTGCGC CTGATCGTCA AGGAAGACCA TCGCGCGCCC
ACCGTCGCCC ACATGGTGTG GTACCACGCC GGCAGCATCG ATGAGCACAA CGGCACCACC
GGTGTCGCCC ACATGCTCGA GCACATGATG TTCAAGGGCA CCCGGGCCGT CGGCCCCGGC
GAGTTCTCGC GCCGCGTCGC CGCCCTGGGC GGCCGCGAGA ACGCCATGAC CACGCGCGAC
TTCACGATGT ACTTCCAGCA GATCGAGAAG TCGCACCTGG CCGACGTGAT GGCGCTCGAA
GCCGACCGCA TGGCCAACCT CCAGCTGACC GACAAGGAAT TCAAGCCGGA GATGAACGTG
GTCAAGGAAG AGCGCCGCAT GCGCATCGAC GATTCCGCCC GCGCCACGGT CTACGAGCAG
ATGCTTGCCG TGCTCTTCAA CGCCGCGCCG TACCGCAACC CGACCATCGG CTGGCCGTCC
GACCTCGACA CGATGACGGT GCAGGACGCG CAGGACTGGT ATCACAAGTG GTACGCGCCC
AACAACGCGA CGGTGGTCGT CACCGGCGAC GTCAACCCGG ACGAGGTCTT CCGCCAGGCC
CAGCGCACCT ACGGCAAGCT CCAGCCGCAT GCGCTGCCGC GCCGCTACGC GCAGGACGAG
CCCAAGCAGG TCGGCGTCAA GCGCATCTGG GTCAAGGCGC CGGCCGAGAA TCCCTATGTG
GTGCTCGCCT ACAAGGCGCC GCCGCTGCGG GACGTGGAGA AGGATGTCGA TCCGTATGCG
CTGGAAGTGC TGTCCGCCGT GCTCGACGGC TACGACAACG CCCGTTTGCC CAACCTGCTG
GTCAAGGGCA AGGATGAAAA AGGCGGGCGT CTCGCCGATG ACGTCAACGC CGGCTACGAC
GGCATGAACC GCGGCCCGTC GATCTTCCTG CTGGACGGCG TGCCCGCCGA CGGCCACACC
ACCGCCGAGA TCGAGCAGGC GCTGCGCGCG CAGATCGACC GCATCGCCAG GGATGGCGTG
ACCGAAGCCG AGCTCAAGCG CGTCAAGGCG CAGGTCGTGG CCGCGCAGAT CTACAAGCGC
GATTCGGTGT TCGGCCAGGG CATGGAAATC GGCATGGCCG AGATGACCGG CCTGTCGTGG
CGCGATCTGG ACCGCATTCT GGAGAAGATC AAGTCCGTGA CGCCCGCGCA GGTCCAACAG
GTCGCCAAGA CCTACTTCAC TGAAGACAAC CTGGTCGTGG CGACACTGTT GCCGCAACCG
ATCGACCCGA ACAAGCCGGC GCGCAAGCCC GTTCCCGGCA TGCGCGAAGA AGGAGGGCTG
CGTTGA
|
|---|
| Protein sequence | MRSFPQSVSN SARTGLRWAG ITLAVALLAG EAGAQAPAPM AARQAAALTG AKVGTSQADT
HEYRLANGLR LIVKEDHRAP TVAHMVWYHA GSIDEHNGTT GVAHMLEHMM FKGTRAVGPG
EFSRRVAALG GRENAMTTRD FTMYFQQIEK SHLADVMALE ADRMANLQLT DKEFKPEMNV
VKEERRMRID DSARATVYEQ MLAVLFNAAP YRNPTIGWPS DLDTMTVQDA QDWYHKWYAP
NNATVVVTGD VNPDEVFRQA QRTYGKLQPH ALPRRYAQDE PKQVGVKRIW VKAPAENPYV
VLAYKAPPLR DVEKDVDPYA LEVLSAVLDG YDNARLPNLL VKGKDEKGGR LADDVNAGYD
GMNRGPSIFL LDGVPADGHT TAEIEQALRA QIDRIARDGV TEAELKRVKA QVVAAQIYKR
DSVFGQGMEI GMAEMTGLSW RDLDRILEKI KSVTPAQVQQ VAKTYFTEDN LVVATLLPQP
IDPNKPARKP VPGMREEGGL R
|
|---|
| |