Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0385 |
Symbol | |
ID | 1219188 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 413289 |
End bp | 413927 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 637236742 |
Product | hypothetical protein |
Protein accession | NP_518506 |
Protein GI | 17545104 |
COG category | [R] General function prediction only |
COG ID | [COG1279] Lysine efflux permease |
TIGRFAM ID | [TIGR00948] L-lysine exporter |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.394901 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGGGGC CCGGCCCGGA GAGCGCGCCG CTGATCGGCG CGGCGCTGTC GGGCTTCGGC CTGGGCGCGA GTCTGATCGT GGCGATCGGC GCGCAGAACG CGTACGTGCT GCGGCAAGGG CTACGCCGCG AATACGTGCT CGGCGTGGTG CTGATCTGCG CGCTGTGCGA CATGGCGCTG ATCGCGCTGG GCGTGGCGGG CATGGGCACG CTGATCTCGG CGCACCCGGC ATGGCTGACG GCGGTGCGCT GGGCCGGCGC GGCCTTCCTG CTGGCCTACG GCGCACGGGC GTTCCGGGCG GCGTGGCGCG GCGCCGAGCG GCTGCAGGCG CGCAACGGCG ACAAGGCCTC GCATGCGCAG GTGCTGGCGT CCGCGCTGGC GCTGTCGCTG CTCAATCCGC ACGTCTATCT CGACACCGTG GTGCTGCTGG GCGCCATCGG CGGGCGCTAC GCGATGCCGG CCAACGTGGC GTTCGCCGGC GGCGCGATGT GCGCGTCGAT CCTGTGGTTC TCGCTGCTGG GGTTCGGCGC ACGGCTGCTG GAGCCGGTGT TCGCCAGGCC GGTCGCCTGG CGGGTGCTCG ATGCGCTGAT CGGCGCGGTG ATGTGGGCGA TCGCGCTGAC GCTGCTGATG GGCGGTTAG
|
Protein sequence | MTGPGPESAP LIGAALSGFG LGASLIVAIG AQNAYVLRQG LRREYVLGVV LICALCDMAL IALGVAGMGT LISAHPAWLT AVRWAGAAFL LAYGARAFRA AWRGAERLQA RNGDKASHAQ VLASALALSL LNPHVYLDTV VLLGAIGGRY AMPANVAFAG GAMCASILWF SLLGFGARLL EPVFARPVAW RVLDALIGAV MWAIALTLLM GG
|
| |