| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0375 |
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| Symbol | |
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| ID | 1219178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 402412 |
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| End bp | 405330 |
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| Gene Length | 2919 bp |
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| Protein Length | 972 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637236732 |
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| Product | hypothetical protein |
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| Protein accession | NP_518496 |
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| Protein GI | 17545094 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTCTC CGCGCCCGTA TGCCGCTGCC GCCGGCGGCA TCGGACTGTT CCTCGTATTG
CTGGCCACCG CCGTCATGGG CGGCTGGCTG CTGCATTGGC CATGGGTGGT CACGCTGGGC
AACCCGGAGT TCGTGATCGT CTTTTCGACG GCGCTCGCCC TCGCGCTGCT GGGCGCCGGG
GTGGTTGCGC TGTCGGCCGG AAGCCTGGCC CCCGCCCTCG CCGACCGCAC CGGATGGGCA
ACGGCCGCCT GCGGCGGCAC GGCGGCGGTG CTCTGCGCGC TGCGCGTGGT GGAAGCCGCC
ACCGGGTGGT CGGTGGCGCT CGACGTGCCG GACGTGCACC GCTGGCTCGA TCGCCAGTGG
CTCACTGGCT GGATCGGCGC GCCGCAGCCG AGCCACGCGC TGGCCCTCGG CATCACCGGG
CTGGCCCTGG CCCTGGCGCC GGGCCTGTCG CAACGCCGCC AGGCCGTCGC CTTCTACGGC
CTGCTGGCCA TGTCGGTACT CATCAGCGGC GTCGACCTGC TAGGCAGGGC GATGGACCTG
GAGTACCTGT ACCCGGTGTG GCTGAAATGG CGGGCATCGA ATGTCACCGC CGTCTGCAAT
CTCTTTGCCG TGGCAGCAAT CAGTTGCGCC ACGCGAGCCC GGCATTCCCG CCCGTGGCAA
ACCCGCCTGT CGCCCGAAGA CACCATCGTC TGGATCAGCG GCGGCTGCGT GGTGCTGGCC
GGACTGGGCG CGACCGTCAC CGCTTTCATC CTCCAGATCG AAGACGCCGG CACCACCTTC
GGCATCACGC GGGCGCAGGC GCTGTCCAGC TACGCCGAGG AGTTCGATCA GGCACTCACG
GCGCGGATCG AAAACCCGCG GCTGGTCGTG GCGGCCCTGC GGGTGCAGGA CGTGTTGCGC
CATCCCGCCG ACAACGGGGT GCGCCTGCGC GGCCTGGCAG CGCTCAACGC GTTCCGCGAT
CACGGCTATT CGTACCTGGC GCTACGCACG CTGGCGGGCG AAACCGTGCT CAAGCTGGGC
GCGGAGATCG CCCAGCCCGA ACTCGCCATC CGGCTGCAGG CCGGCCGCGC CCCGGAGCGA
TCCACGCTGC AGTGGGTCCA CGGCTTCAGC ATGCGCACCG AAACGCCGGT CATGGCCGAC
GGCACGCAGG TCGGCTGGCT CGTCGCCGAA CACCCGCTGG CGCACATGAC GTCCCGCTAT
ACCGGGACGC GCGGCCTGGG CATCACCGAG ACCCTCGCGA TATCCGGCCT GGATGCCCAC
GGGCGCCTGA TGTCGTTCCC GCAGCGCTTC GATGCCTATG TCTTCGAACT GCCGGCCTGG
ATGCCCGAGC ACCGGCCGCT GCCGTCGCGC CTGGCCGTCA CCGGCCAGAC CGGCTACGGC
CAGTGGCGCG ACATCCACGG CATCCCGACC GCCTTCGGCT ATACGCCCAT CGGGCACACC
GGCCTCGCGC TGATCAGCAA GATCGCCAGC GCCGAGCTCT ATGCCCCCAT GCGGCAGCAG
TTCGAGCGCC TGGGCAGCTT CATCCTGTGC ATGATGATCG GCGGCGTCCT GGCCATCCGC
GTGACGGTGC AACCGTTTGC CAACCGGCTG GCCGCCTCGG AACGGGCGCT GCGCAAGGCC
AACGAGAACC TCGAACGCCG CCGCGATGCG CTGCGCGCCA GCCGCGAACA GCTGCGCCTG
GTGGCCGACA ACGTGCCCGC CCAGCTCAGC TACGTCGATT CCGGCAACGT CCTGCGCTTC
GCCAGCCGCA CCCTGCAGGA GGCCTTCGGC CGCACCGAGG CCGACGTGCT GGACCGCCCC
GTGCGCGAGC TCTACGCCCC CGACGACTAC CGCACCCTGC TGCCCTACAT GACCGAGGTG
CTGGAAGGCT ACCCGGTGCA GTTCGAGATC ACCTCGCTGC AGACCGGCAC GCCGCGCTAC
CTCAGCGGCC ACTACTACCC TGACTACGAC GACCGCGGCA GGCAGCGCGG CTACTTCTCC
GTCCTGCAGG ACCTGACCCT GCGCAAGACC GCCGAACTCG CCCTCGCACG CAGCGAACGC
GCGCTCAAGC TGGTGCTCGA CAACGCCCCG CTGCTGGTTT CGCACATCGA CGCCCACGGC
GTCTTCACGT TCTGCAACGT CACGCACGCG CGCTGGCTGC AGTGCACGCC GGAGGAGGTC
TGCGGCCGGC ACGCGCGCGA GACATTCACG CCGGGCACCT ATGCGCTGCT GGCGCCCTAC
ATCGAGCGCG CGCTGGCCGG CGAATCGGTG GAGTTCGAAA TCAACGCGCC CTGGTACGAA
AAGGCGACCG GCTCCAGCGC GCGCAGCCGC ACGCGCTACT TCCGCGGGCA GTTCGTCGTC
GATGCCACCG ACACGGGCGA GCGCGACGGC TTCTACGCCT TCGTGCAGGA CGTGACCGAA
GCCAAGCGCA ACGAGATGGA GCTGTCACGC ATGGCGCACT TCGACGCGCT CACCGGCCTC
GCCAACCGCT ACGAACTCTA CGAGCGCCTG CGCGCCGCGC TGGAGCGCCG CCAGCGGCAG
CCGGCGCCGA TGGGCGTGCT GTACCTCGAC GTGGACCACT TCAAGCGCAT CAACGACACC
TACGGCCACG CCGCCGGCGA TGCGGTGCTG GTCGAGGTCG CCCGCCGGCT GCAGCACACC
GTGCGCCGCA CCGACACCGT GGCCCGCCTG GCCGGTGACG AATTCGTCAT CCTGCTGGAC
CCGATCGACA CCCCCGATGA TGCGCTGCAC ACCGCCGGGA AAGTGGTGGC GGCGATCCGC
CCGCCGATCC AGCTGCGCGG CGACATCGCC CTGAACGTCA CGGCCAGCAT CGGCGTAGCC
TGCCCCAGCC CGGAGGCAGC CGATGCGGAC GCCGTGCTGC GCGAGGCGGA TCGCGCGCTT
TACTGGGCAA AGTCACGCGG ACGCGACACC GCAGCCTGA
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| Protein sequence | MVSPRPYAAA AGGIGLFLVL LATAVMGGWL LHWPWVVTLG NPEFVIVFST ALALALLGAG
VVALSAGSLA PALADRTGWA TAACGGTAAV LCALRVVEAA TGWSVALDVP DVHRWLDRQW
LTGWIGAPQP SHALALGITG LALALAPGLS QRRQAVAFYG LLAMSVLISG VDLLGRAMDL
EYLYPVWLKW RASNVTAVCN LFAVAAISCA TRARHSRPWQ TRLSPEDTIV WISGGCVVLA
GLGATVTAFI LQIEDAGTTF GITRAQALSS YAEEFDQALT ARIENPRLVV AALRVQDVLR
HPADNGVRLR GLAALNAFRD HGYSYLALRT LAGETVLKLG AEIAQPELAI RLQAGRAPER
STLQWVHGFS MRTETPVMAD GTQVGWLVAE HPLAHMTSRY TGTRGLGITE TLAISGLDAH
GRLMSFPQRF DAYVFELPAW MPEHRPLPSR LAVTGQTGYG QWRDIHGIPT AFGYTPIGHT
GLALISKIAS AELYAPMRQQ FERLGSFILC MMIGGVLAIR VTVQPFANRL AASERALRKA
NENLERRRDA LRASREQLRL VADNVPAQLS YVDSGNVLRF ASRTLQEAFG RTEADVLDRP
VRELYAPDDY RTLLPYMTEV LEGYPVQFEI TSLQTGTPRY LSGHYYPDYD DRGRQRGYFS
VLQDLTLRKT AELALARSER ALKLVLDNAP LLVSHIDAHG VFTFCNVTHA RWLQCTPEEV
CGRHARETFT PGTYALLAPY IERALAGESV EFEINAPWYE KATGSSARSR TRYFRGQFVV
DATDTGERDG FYAFVQDVTE AKRNEMELSR MAHFDALTGL ANRYELYERL RAALERRQRQ
PAPMGVLYLD VDHFKRINDT YGHAAGDAVL VEVARRLQHT VRRTDTVARL AGDEFVILLD
PIDTPDDALH TAGKVVAAIR PPIQLRGDIA LNVTASIGVA CPSPEAADAD AVLREADRAL
YWAKSRGRDT AA
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