| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0374 |
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| Symbol | rpoH |
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| ID | 1219177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 401283 |
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| End bp | 402203 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637236731 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | NP_518495 |
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| Protein GI | 17545093 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.391616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAACGCAG TCATTCCCGT GAACACCGTT TCCGCCGTCG CCACGCAGCC GTCGTCCAAT
GCCTGGGCGC TAGCCTTTCC CGGCAGCCTG GGCAACCTTG ACGCCTATAT CCAGAGCGTC
AACCGCGTGC CGATGCTCAC GGCCGAAGAA GAACAACAGC TGGCCCGCGA CTATCACGCG
ACCGGCAACC TCGACGCCGC GCGCCGGCTG GTGCTATCGC ACCTGCGCCT GGTGGTGTCG
ATCGCCCGCC AGTACCTCGG CTATGGCCTG CCGCATGCCG ACCTGATCCA GGAAGGCAAC
GTCGGCCTGA TGAAGGCCGT CAAGCGCTTC GACCCGGACC AGGGCGTGCG GCTGGTGTCG
TACGCGATCC ACTGGATCAA GGCCGAGATG CACGAGTACA TCCTGAAGAA CTGGCGCATG
GTCAAGGTGG CGACCACCAA GGCCCAGCGC AAGCTGTTCT TCAACCTGCG CAGCCACAAG
CAGGACGCCC ACGCCACCTT CACGTCCGAC GAAGTCGATG CGGTGGCGCA AGAGCTGAAC
GTCAAGGGTG CCGAGGTGCG CGAGATGGAA ACGCGCCTGT CCGGCGGCGA CATCGCGCTG
GAGGGCCAGA TCGACGACGG CGAAGAGTCG TTCGCCCCGA TCGCCTACCT GGCCGATACG
CACAACGAGC CCACCCGCGT GCTGGAAGGG CGCGGCCGCG ACCGCTTGCA GAGCGAGGGC
ATCGAAACCG CCCTGGCCAA GCTGGACGAC CGCAGCCGCC GCATCATCGA GGCGCGCTGG
CTCCACGTCA ACGACGACGG CTCGGGCGGC GCCACGCTGC ATGAACTGGC CGACGAGTTC
GGCGTGTCGG CCGAGCGCAT CCGCCAGATC GAATCGGCCG CGATGAAGAA GATGAAGGGC
GCGCTGCAGT CTTTTGCCTG A
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| Protein sequence | MNAVIPVNTV SAVATQPSSN AWALAFPGSL GNLDAYIQSV NRVPMLTAEE EQQLARDYHA
TGNLDAARRL VLSHLRLVVS IARQYLGYGL PHADLIQEGN VGLMKAVKRF DPDQGVRLVS
YAIHWIKAEM HEYILKNWRM VKVATTKAQR KLFFNLRSHK QDAHATFTSD EVDAVAQELN
VKGAEVREME TRLSGGDIAL EGQIDDGEES FAPIAYLADT HNEPTRVLEG RGRDRLQSEG
IETALAKLDD RSRRIIEARW LHVNDDGSGG ATLHELADEF GVSAERIRQI ESAAMKKMKG
ALQSFA
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