Gene RSc0356 details

Gene Information

• Locus tag: RSc0356
• Symbol: secB
• ID: 1219159
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 387052
• End bp: 387573
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637236713
• Product: preprotein translocase subunit SecB
• Protein accession: NP_518477
• Protein GI: 17545075
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1952] Preprotein translocase subunit SecB
• TIGRFAM ID: [TIGR00809] protein-export chaperone SecB

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.0685148
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCGACC AGCAACAGCA GCAACCCGGC CAGGACGGCC AGCCGTTCTT CAATATTCAG 
CGCGTCTACC TGAAGGACCT GTCGCTGGAG CAGCCGAACT CGCCGCACAT CTTCCTGGAG 
CAGGAGCAGC CGACGGTGGA AGTGCAGGTC GACGTGGCCG CCACGCAACT GGCCGAGGGC 
GTGTTCGAAG TCACGGTGAT CGGTACGGTC ACCACCAAGG TCAAGGAGAA GGTCGCGTTC 
CTGGTGGAAG CCAAGCAGGC CGGCATCTTC GACATCCGCA ACGTGCCGGT CGAGCAGATG 
GACCCGCTGC TGGGCATCGC CTGCCCGACC ATCGTGTACC CGTACCTGCG CTCGAACATC 
GCCGACACCA TCGGCCGCGC CGGCTTCCAG CCGATCCACC TGGCCGAGAT CAACTTCCAG 
GCACTGTACG AGCAGCGCCT GGCCTCTGCC ATGGAAGAGG CCCAGGCCGC CGGCGGCAAC 
GGCGGCATCG TGATGCCGGA CGGCTCCAAG GCCACCCACT GA 

 

Protein sequence

MSDQQQQQPG QDGQPFFNIQ RVYLKDLSLE QPNSPHIFLE QEQPTVEVQV DVAATQLAEG 
VFEVTVIGTV TTKVKEKVAF LVEAKQAGIF DIRNVPVEQM DPLLGIACPT IVYPYLRSNI 
ADTIGRAGFQ PIHLAEINFQ ALYEQRLASA MEEAQAAGGN GGIVMPDGSK ATH