Gene RSc0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0316 
Symbol 
ID1219119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp347303 
End bp347938 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content75% 
IMG OID637236673 
Productlipoprotein 
Protein accessionNP_518437 
Protein GI17545035 
COG category[R] General function prediction only 
COG ID[COG3218] ABC-type uncharacterized transport system, auxiliary component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.926331 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGATCC TGCCGACCGT GTTGCGCCGC GCGCTGGTGC TGTCCGCCCT GGCCGCGCTG 
GCGGCCTGTT CCAGTACGCC GACCGCGCCC GCCGCGGTCT ACGACTTCGG CTTGGCGCCC
GCTGCCGCCG GCGGTCCTCG CCTGCCGACC GCGCTGCGGG TGACCGAGGT GGTCGGCCCG
GGCTGGATGG ACGGCAACGC CATCTACTAC CGCCTGGCCT ATGCCCAGGG GCAGCGCACC
GAGCTGTATG CCAACAGCCG CTGGGTGGAG TCGCCCGTCA ACCTGTTCGA TGCGCGCCTG
CGCAACGCGG TGGCCGCGCG CGGCCAGGTG GTCGGCTATG GCCTGCCGGA GGTGCCGACA
CTGCGGGTCG AACTGGTCGA CTTTTCGCAG GTGTTCGACC GGCCGGACGC CAGCCGCGGC
GTGGTGCGGC TGCGCGCCTC GGTGTTCATG GCGCGCGGGC TGGTCGCACA GCGCGTGGTG
CAGGCCGACG TGCCGGCACC GAGCGCCGAC GCGGCGGGTG GCGTCAGCGC GCTGGCGCAG
GCTTCCGACC GCGCCATCGG CGAGGTGCTG GACTGGGTGG CGGGGCTGGC GCTGCCGGCG
GCGGCCCAGT CCGTGGTGCC GACGCGCGCG CCGTGA
 
Protein sequence
MLILPTVLRR ALVLSALAAL AACSSTPTAP AAVYDFGLAP AAAGGPRLPT ALRVTEVVGP 
GWMDGNAIYY RLAYAQGQRT ELYANSRWVE SPVNLFDARL RNAVAARGQV VGYGLPEVPT
LRVELVDFSQ VFDRPDASRG VVRLRASVFM ARGLVAQRVV QADVPAPSAD AAGGVSALAQ
ASDRAIGEVL DWVAGLALPA AAQSVVPTRA P