Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0316 |
Symbol | |
ID | 1219119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 347303 |
End bp | 347938 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 637236673 |
Product | lipoprotein |
Protein accession | NP_518437 |
Protein GI | 17545035 |
COG category | [R] General function prediction only |
COG ID | [COG3218] ABC-type uncharacterized transport system, auxiliary component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.926331 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGATCC TGCCGACCGT GTTGCGCCGC GCGCTGGTGC TGTCCGCCCT GGCCGCGCTG GCGGCCTGTT CCAGTACGCC GACCGCGCCC GCCGCGGTCT ACGACTTCGG CTTGGCGCCC GCTGCCGCCG GCGGTCCTCG CCTGCCGACC GCGCTGCGGG TGACCGAGGT GGTCGGCCCG GGCTGGATGG ACGGCAACGC CATCTACTAC CGCCTGGCCT ATGCCCAGGG GCAGCGCACC GAGCTGTATG CCAACAGCCG CTGGGTGGAG TCGCCCGTCA ACCTGTTCGA TGCGCGCCTG CGCAACGCGG TGGCCGCGCG CGGCCAGGTG GTCGGCTATG GCCTGCCGGA GGTGCCGACA CTGCGGGTCG AACTGGTCGA CTTTTCGCAG GTGTTCGACC GGCCGGACGC CAGCCGCGGC GTGGTGCGGC TGCGCGCCTC GGTGTTCATG GCGCGCGGGC TGGTCGCACA GCGCGTGGTG CAGGCCGACG TGCCGGCACC GAGCGCCGAC GCGGCGGGTG GCGTCAGCGC GCTGGCGCAG GCTTCCGACC GCGCCATCGG CGAGGTGCTG GACTGGGTGG CGGGGCTGGC GCTGCCGGCG GCGGCCCAGT CCGTGGTGCC GACGCGCGCG CCGTGA
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Protein sequence | MLILPTVLRR ALVLSALAAL AACSSTPTAP AAVYDFGLAP AAAGGPRLPT ALRVTEVVGP GWMDGNAIYY RLAYAQGQRT ELYANSRWVE SPVNLFDARL RNAVAARGQV VGYGLPEVPT LRVELVDFSQ VFDRPDASRG VVRLRASVFM ARGLVAQRVV QADVPAPSAD AAGGVSALAQ ASDRAIGEVL DWVAGLALPA AAQSVVPTRA P
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