| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0254 |
|---|
| Symbol | |
|---|
| ID | 1219057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 285153 |
|---|
| End bp | 286781 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637236611 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_518375 |
|---|
| Protein GI | 17544973 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5361] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.530486 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGGATTG ACGATCCGCG CGGCGAGAAG CGCAAGCATC CTTGGGGGGA TGATCGACAG
GCGTCCGGTT CCCTGTCGGT GCGCGCCGAC AAGAAGGAGA ACACGATGAC GCATCGCCAT
GCGCCCGCGC GCCGGCTCAC GAGGCTGGTC GCCCTGGCGC TGAGCGTGGC CGCGCCTGTC
CTGACCGGCT GCTCCACTCC ACCGGGCCCG GCCCCCGTCG CGGCCGTCGC GCCGCGCAGC
CCGCAAGCGC CGGATGCACT CGCCAGGTCC GTCTATGTCT ACGCCTTTCC GCTGATGATG
ACGGATGCGC TGCAGCGGAC CGCCTCGGTG CAAGCACCGG CAGGCCGTTT CCTGCATCAG
CGCAGCCTGG ACGACGATGC GCTGCCGCCC GGCGTGCGCG CCCGTGCCGA CACGCTGGCC
AGCAGCGCCT TCCTGGACCT GCGCGACGGC CCCATCGTGC TCAGCGTGCC GGATCTTGGG
CTGCGCCACG CATGGGTCTC GCTGTACGAC GCCTGGACCG ACATCTTCGA CACCCTGGGC
AGCCGCACCA CCGGCGCGCG CGCCCTGCAG GTCGCCATCA CGCCGCCCGG CTGGACAGGC
GTGCTGCCGG CCGGCGTGCG CGCCATCGCC GCGCCGACGC CGATGGTGTG GGTGGTCGCC
CGCGTGCAGG TCAGCGGCCC GCGCGACGAA GCGGTCGCGC GGCGGCTGCA GGATCGCTTC
CGGCTGACGC CGCTGGAAGA CCTCAACAAG CCGCCGGCAC GCGAGGCGCA CGAGAGGCGC
CGGCCCGATG CCGACCTCGC CCAGAACGCC GCCCCGCAAC GCACGACAGC ACCGGATGCC
AACGCGGGTT TCACGCGCAT GGCCACCCTG CTCAAGGACA AGCCCGACAC CGGCGCCACC
CTGGCCGAGG CCCGGCAACA GGTGACGGCG CTGGACGCCA ATGCGTATTT CGCGCGCTTT
TCCGCCCTGC TCAAGGACAA CCCGCCGCAC CCCGCCGACT CGACCATGCT GCAGAGCGTG
CGAGCGCTGG GCATCGCGCC CGGCATGCCG GTCGACCTCA ACCGGGATGC CGCCGGCGAG
GCCATCGAAC GCGGTGCCGC CGCGGCACGC GACAGCCTGG CCATCGCCGC CAGGCAGCCG
CCGATCACAC AGAACGGCTG GTTCATCCCG CGCAACATCG GTGCCTACGG GCTCGACTAT
GAGCAGCGCG CCATCGTCGC CTGGGACGGC GCCGGCACCG ACCTGCCGCA GGACGCGCTC
ATCGCGCGCA CCAGCACCGA CGCGGACGGC ATGCCGCTCG ACAGCATGCA CCGCTACGTC
CTGCATTTCG ACCCAGGTCA ACTGCCGCCC GAAAACGCCG GCTGGGCGCT GGCCGCGGTC
GGCATCGCCC GCCGCCCGTC GCAGCCCGGC GGGCGCCGCG ACCTGCTGAG CGCGGCCGAT
CGCCCGCGTC CCAACCGCGA CGGCTCGCTG GACATCTACC TCCAGCGCGA CCCGCCACCC
AAGGGCAGCC GCGCCAACTG GCTGCCCGTG CCAACCGGCC CGTTCATCGT GCGCCTGACG
CTGGCGTGGC CCAAGGAGGC CGCGCTGGAC GGCTCGTGGC TGCCGCCCGT CGTGCAGCGA
CAGGAATAG
|
|---|
| Protein sequence | MRIDDPRGEK RKHPWGDDRQ ASGSLSVRAD KKENTMTHRH APARRLTRLV ALALSVAAPV
LTGCSTPPGP APVAAVAPRS PQAPDALARS VYVYAFPLMM TDALQRTASV QAPAGRFLHQ
RSLDDDALPP GVRARADTLA SSAFLDLRDG PIVLSVPDLG LRHAWVSLYD AWTDIFDTLG
SRTTGARALQ VAITPPGWTG VLPAGVRAIA APTPMVWVVA RVQVSGPRDE AVARRLQDRF
RLTPLEDLNK PPAREAHERR RPDADLAQNA APQRTTAPDA NAGFTRMATL LKDKPDTGAT
LAEARQQVTA LDANAYFARF SALLKDNPPH PADSTMLQSV RALGIAPGMP VDLNRDAAGE
AIERGAAAAR DSLAIAARQP PITQNGWFIP RNIGAYGLDY EQRAIVAWDG AGTDLPQDAL
IARTSTDADG MPLDSMHRYV LHFDPGQLPP ENAGWALAAV GIARRPSQPG GRRDLLSAAD
RPRPNRDGSL DIYLQRDPPP KGSRANWLPV PTGPFIVRLT LAWPKEAALD GSWLPPVVQR
QE
|
|---|
| |