| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0230 |
|---|
| Symbol | |
|---|
| ID | 1219033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 252098 |
|---|
| End bp | 253294 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637236587 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_518351 |
|---|
| Protein GI | 17544949 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4292] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.942813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCA GCTACCTCCG CCCCGCGCCG TCCGGCGCGC ACGGCCATCA CCGCGTCACC
AATATCGAGC TGTTCTTCGA TCTGGTGTTC GTGTTCGCGG TGACGCAGCT GTCGCACCTG
CTGATCGGCA ATTTCACCCT CGCGGGCGGC GCGCAGACAC TGCTGCTGAT GCTGGCCGTG
TGGTGGGTGT GGATCTTCAC TTCGTGGGTC ACCAACTGGC TGGACCCGGA GCAGCTCGCC
ATCCGCCTCC TGCTGCTGGT GCTGATGACG GCGGGGCTGC TGCTGTCGGC GTCGCTGCCG
CAGGCGTTCG GCTCGCGCGG GCTGGCGTTC GCGCTCGCTT ACGTCTTCAT GCAGTTCGGC
CGCACGCTGT TCTTCCTGTG GGCGGTGCGC GGCGAATCGC TGGGCATGCG GCGCAACTTC
CAGCGCATCG CCACGTGGCT GGGCGTCTCG GCGGTGTTCT GGCTGGCGGG CGGCCTCGCG
GAGGGGCCGG CGCGCTGGGC CGCCTGGATC GCCGCGCTCG GCATCGAATG GCTCGGACCG
TCGGCGGGCT TCTACACCCC CGGCCTGGGC CGCTCGACGG TCGACGACTG GCATGTCGAA
GGCGGCCACA TGGCCGAGCG CTGCTCGCTG TTCATCATCA TTGCGCTGGG CGAATCGGTG
CTGGTCACCG GCTCGACCTT CGCCGGGCTC GACTGGAGCC CGGCCAGCAT CGCCGCGATG
GCGTTGTCGT TCATCGGCAG CCTGGCGATG TGGTGGCTGT ACTTCGACAC CATCGCCGAG
CGCGGCAGCC ACACCATCTC GCACGCGGCC GATCCCGGGC GGCTGGCGCG ATTGGCCTAC
ACCTACATCC ACGTGCTGCT GGTGGCGGGC ATCATCGTCG GCGCGGCGGC CGATGAATTC
GTGCTGGCGC ATCCGGTGGG GCATCCGCAC CCGGGCACGG CGCTGGCGGT GCTCGGCAGC
GCCGCGCTCT ACCTGCTCGG CAACCTGCTC TTCAAGTGCG CGATCTTCGG GCGGGCCCGC
GCGGCGCACA TGCTGGGGCT GGCGGCGCTG GGACTGATCG GACTGGTGGC GGCCGCACTG
CCGGCGCTGG CGGTCTCCGC GCTGGCGACG CTGGTGCTGT GCGGCACAGC GGCATGGGAG
TGGTACACCC GCGCGTGCGA GGTGCCCACC ACCCCCGGCC ACGGACACCG CGCCTAG
|
|---|
| Protein sequence | MPRSYLRPAP SGAHGHHRVT NIELFFDLVF VFAVTQLSHL LIGNFTLAGG AQTLLLMLAV
WWVWIFTSWV TNWLDPEQLA IRLLLLVLMT AGLLLSASLP QAFGSRGLAF ALAYVFMQFG
RTLFFLWAVR GESLGMRRNF QRIATWLGVS AVFWLAGGLA EGPARWAAWI AALGIEWLGP
SAGFYTPGLG RSTVDDWHVE GGHMAERCSL FIIIALGESV LVTGSTFAGL DWSPASIAAM
ALSFIGSLAM WWLYFDTIAE RGSHTISHAA DPGRLARLAY TYIHVLLVAG IIVGAAADEF
VLAHPVGHPH PGTALAVLGS AALYLLGNLL FKCAIFGRAR AAHMLGLAAL GLIGLVAAAL
PALAVSALAT LVLCGTAAWE WYTRACEVPT TPGHGHRA
|
|---|
| |