| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0222 |
|---|
| Symbol | rtcR |
|---|
| ID | 1219025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 243896 |
|---|
| End bp | 245503 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637236579 |
|---|
| Product | sigma-54 interacting transcription regulator protein |
|---|
| Protein accession | NP_518343 |
|---|
| Protein GI | 17544941 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4650] Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAA CCGTGGCCAT CGGCTTTGTC GGCACCGTGC TGGACTATGC CGGCAAGGGC
AACCAGCGCT GGGAGCGCTG GCGCCCGTCC GTCGGACTGT GCCAGCAGGA AGACCTGGTC
ATCCACCGGC TGGAATTGCT GCACGACGCG CGCAGCCGTG GCCTGTTCGA GCGCCTGCGG
GACGACATCG CCGCCGTCTC GCCGGAAACC GAGGTGCGCA GCGTCGAGAT CGCGCTGCGC
GATCCCTGGG ATTTCGAGGA GGTCTACGGC ATGCTGCACG ACTTCGCCCG GGGCTACGCA
TTCGACACCG ACGCCGAGGA CTACCTGATC CACATCACCA CGGGCACCCA CGTCGCGCAG
ATCTGCTGGT TCCTGCTGGC CGAGGCGCGC TATCTGCCGG CCCGGCTGGT GCAGACCTCG
CCGCCGCGCA AGAAGGCGCC GGGCAACATC GCGGGCAGCT ATGCCCTGAT CGATCTCGAC
CTGTCCCGCT ACGACAGGAT CGCCACGCGC TTCGCGCGCG AGCGCGAAGA CACGGTGTCG
CGGCTGAAGT CCGGCATTGC CACGCGCAAC CCCGCGTTCA ACCGCATGAT CGAGCAGATC
GAGCGCGTGG CATCGCGGTC GCGCTCGCCG ATGCTGCTGT TCGGCCCGAC CGGCGCCGGC
AAGTCGTTCC TGGCGCGGCG CGTGTACGAG ATGAAGAAGG CGCGCCACCA ACTGAGCGGC
CGCTTTGTCG AGGTGAACTG CGCCACGCTG CGCGGCGACA GCGCGATGTC GGCGCTGTTC
GGCCACGTCA AGGGCGCCTT CACCGGCGCG CAGACCGACC GCGCCGGGCT GCTACGCAGC
GCGGACGGCG GCCTGCTGTT CCTGGATGAG ATCGGGGAGC TCGGGCTGGA CGAGCAGGCC
ATGCTACTCA AGGCCATCGA AGAGAAGCGC TTCCTGCCGT TCGGCAGCGA CCGCGAGGCG
CAGAGCGATT TCCAGCTGAT CGCGGGCACG GTGCGCGACC TGCGGCAATG GGTGGCCGAG
GGACGCTTTC GCGAAGACCT GTTCGCGCGC ATCAACCTGT GGACCTTCGA TCTGCCCGGC
CTGGCCCAGC GCCCGGAAGA CATCGAGCCC AACCTCGATT ACGAACTGGT CCGCTTTGCC
CGCGAGCACG GCGAGCAGGT GCGCTTCCAT ACCGAGGCGC GGCGCGCTTA CCTGCGGTTT
GTCGCCTCGC CCCAGGCGCG CTGGAGCGGC AACTTCCGCG AGCTGTCGGC GTCGGTCACG
CGCCTGGCCA CGCTGGCCGA AGGCGGCCGC ATCACCGAGG CCGGCGTGGA GGCGGAAATC
GGCCGGCTGC GGCGCGCCTG GTCCGGCGCC GAGGCGCCCG CCGGCGACGA CACCCTCGCC
GGGCTGCTGG GTGACGGCGC GGCCGCGCTC GATCGGTTCG ACCGGATGCA GCTGGAGAGC
GTCGTCCGGA TCTGCCGGGA ATCGGCATCG CTGTCGGATG CGGGGCGGCG GCTGTTCGAT
GTGTCGCGGC TGGAGAAAGC CAAGGTCAAC GATGCGGACC GGCTGCGCAA GTACCTCGCC
CGGTTCGGCC TGGACTGGCA GCAGGTGCGC GGCCAGGCGG CGAACTAG
|
|---|
| Protein sequence | MQKTVAIGFV GTVLDYAGKG NQRWERWRPS VGLCQQEDLV IHRLELLHDA RSRGLFERLR
DDIAAVSPET EVRSVEIALR DPWDFEEVYG MLHDFARGYA FDTDAEDYLI HITTGTHVAQ
ICWFLLAEAR YLPARLVQTS PPRKKAPGNI AGSYALIDLD LSRYDRIATR FAREREDTVS
RLKSGIATRN PAFNRMIEQI ERVASRSRSP MLLFGPTGAG KSFLARRVYE MKKARHQLSG
RFVEVNCATL RGDSAMSALF GHVKGAFTGA QTDRAGLLRS ADGGLLFLDE IGELGLDEQA
MLLKAIEEKR FLPFGSDREA QSDFQLIAGT VRDLRQWVAE GRFREDLFAR INLWTFDLPG
LAQRPEDIEP NLDYELVRFA REHGEQVRFH TEARRAYLRF VASPQARWSG NFRELSASVT
RLATLAEGGR ITEAGVEAEI GRLRRAWSGA EAPAGDDTLA GLLGDGAAAL DRFDRMQLES
VVRICRESAS LSDAGRRLFD VSRLEKAKVN DADRLRKYLA RFGLDWQQVR GQAAN
|
|---|
| |