| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0191 |
|---|
| Symbol | |
|---|
| ID | 1218994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 212253 |
|---|
| End bp | 213629 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637236548 |
|---|
| Product | transmembrane two component system sensor kinase transcription regulator protein |
|---|
| Protein accession | NP_518312 |
|---|
| Protein GI | 17544910 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0364977 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGTGT TCATCTCAGC CTTTTTGGTG GCGTTTGTGG CGGGGCAAGA CAGCCATTCC
TCGAAGGCGT CGCGCAGGCG CCTGTTGCTA TCGCATTCCG CCCCGGCCGA GTTGGTGGCG
GGCGGGCTGG CCATTCTGCT GCTGGCCGCA TCGGTCGCAT GGCTTGCTAT AGCGTTTCAG
GCCAGGGATG CGCCCTTTGT ATTGCTGGCC CTGGCAAGTA TTGCCGCTGT CCTGGCTCTC
GCCTTTTATT GGCTGCGGCT TCGCATGCTG CGCGCCGCTG TGGCGCGGGA CTTGACCGAC
CTGGAGAAGA GCGAGGCTCG GCTGGCGGGC ATCATCCGCT CTTCCATGGA GGCGATCATT
TCCGTGGACG ATGCCCAGCG CATCGTGCTG TTCAATCCTA TGGCGGAAAC CCTGTTCGGA
TGCCCGGCCA ATCACGCCAT TGGCCGTCCG CTGTCCGACT TCATGCCGGA GCGGTTTCGC
GGCGCGCACG AAGCACACGT GCGGCGCTTT GGGGTGACCG GCGTATCGGA GCGTCAGATG
GGCAAGCAGC GCCCGCTCTT TGCTCTGCAC GCGGATGGCC GTGAATTTCC AATCGAAGCC
TCCATCTCGC AAATCGAGGT GAACGGCGGC AAGCTCTTTA CCGTGATGCT GCGCGACACC
ACCGAGCGTG TCCGGGCGGA AGCGGCGCTG CGGCGCTCGC AGGAGGAGCT GCAGCATTTG
TCGGACAGCA TTCTGGCTTC GCGGGAGGAG GAGCGGCATC GCATCGCCCG CGAGCTGCAT
GACGATCTGG GACAGCGCCT GAGCGCGCTC AAGATGGATA TCTCACTGCT GGCGGCGGAT
CTCCAGGCCG AAGGCGGCGA CAGAACGCTG ATCGCCCAGA CGGAGGCCAT GCAGCGAGTG
ATCGACGAGA CGATCTCGGC GGTGCGGCAA ATTTCCGCCG ACCTTCGTCC ACCGCTGCTC
GACGAGTTGG AGCTGGTACC GGCCATCGAG TGGATCGCCA AAAATTTCCG CCAGCGCTTC
GGCTTGATCG TCAACGTGCA CGCCCAGGAG ATGCCGATGC AGGAGCGAGC GGCAATTTCT
GTCTTTCGGA TCGTGCAGGA AGCACTGAAC AACGTGGTGC GCCACGCCGA TGCCACCCGC
GTTGAGATCG AGTTTGTGCG GCTGGACGAT ATGCTCGAGT TGTCGATCCA GGATAACGGC
CGTGGTTGGA GCGGGGTACC ACCGGCCCCG GGCGAGCGCA AGCCGCTGGG GTTGCTTGGT
ATTCGCGAGC GCGCGCGTCT GCTAGGCGGC CAGGCCACGA TCGCACACAC GCCTGACAGC
GGCTTTCGCT TGAGCGTACG TTTTCCCGCT ACTCAAGAAG TGACTGAGGA GACCTGA
|
|---|
| Protein sequence | MFVFISAFLV AFVAGQDSHS SKASRRRLLL SHSAPAELVA GGLAILLLAA SVAWLAIAFQ
ARDAPFVLLA LASIAAVLAL AFYWLRLRML RAAVARDLTD LEKSEARLAG IIRSSMEAII
SVDDAQRIVL FNPMAETLFG CPANHAIGRP LSDFMPERFR GAHEAHVRRF GVTGVSERQM
GKQRPLFALH ADGREFPIEA SISQIEVNGG KLFTVMLRDT TERVRAEAAL RRSQEELQHL
SDSILASREE ERHRIARELH DDLGQRLSAL KMDISLLAAD LQAEGGDRTL IAQTEAMQRV
IDETISAVRQ ISADLRPPLL DELELVPAIE WIAKNFRQRF GLIVNVHAQE MPMQERAAIS
VFRIVQEALN NVVRHADATR VEIEFVRLDD MLELSIQDNG RGWSGVPPAP GERKPLGLLG
IRERARLLGG QATIAHTPDS GFRLSVRFPA TQEVTEET
|
|---|
| |