Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0159 |
Symbol | |
ID | 1218962 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 178653 |
End bp | 179879 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637236516 |
Product | acetylornithine aminotransferase protein |
Protein accession | NP_518280 |
Protein GI | 17544878 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
TIGRFAM ID | [TIGR01885] ornithine aminotransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.903246 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGACCG CAGCCACTCA CCCCAGCTAT GCCCTGGAAA CACGCTACGG CGCGCGCAAC TACGCGCCGC TGCCGGTGAT GCTGGAACGC GGCGAAGGCG TCTGGCTGTT CGACACGGCG GGCCGGCGCT ACCTCGACAT GATGTCGGCC TACTCCGCCG TCAGCTTCGG CCATTCGCAC CCGCGGCTGG TCGCCGCGCT GGTCGAACAG GCCGGCCGGC TGACGCTGAC TTCGCGCGCC TTCCACAACA CCGAGCTCGG GCCGTTCCTG GCCGACGTGT GCCGCATCAC GCGCATGGAC CGCGCGCTGC CGATGAACAC CGGCGCCGAG GCCGTGGAGA CCGCCATCAA GGCGGCCCGC AAATGGGCCC GCGAGGTCAA GGGCACCCCG CCGGACGCCG CCGAGATCAT CGTCTTCGAC AACAACTTCC ACGGCCGCAC CACCACCATC GTCGGCTTCT CGTCGCACGA GCAGTACCGC TACGGCTTCG GCCCGTTCGC GGCGGGTTTC CGCCGCATCC CGTTCGGCGA TGCCGAGGCG CTGAAGGCCG CCATCGGCCC CCATACCGGC GCCATCCTGA TCGAGCCGAT CCAGGGCGAG GGCGGCATCG TGGTGCCGCC GCCCGGCTAC CTGAAGCTCG CGCGCGACCT GGCGACGCAG CACAACGCCC TGCTCGTCTG CGATGAGGTG CAGACCGGGC TGGGCCGCAC GGGCGACGTG CTCGCCAGCT GGCACGAGGA CGTGCAGCCC GACCTGGTGG TGCTGGGCAA GGCGCTCGGC GGCGGCATGG TGCCGGTGTC GGCCATCGCG GGGCGGGAAG ACGTGATCGG CGTATTCCAG CCGGGCGACC ACGGCTCCAC CTTCGGCGGC AACCCGCTGG CCGCGCACAT CGGCCGCGCG GCACTGGCCT TGCTGCAGGA AGCGCAGTTG CCGCGGCACG CGGCCCGCCT GGGCGAAGCC TTCATCGCCG AACTGCAATC GCTGATCGGG CACGGCGTGC GGCAGGTGCG CGGGCGCGGC CTGATGATCG GCCTGCAGCT CGACGCCGAC ATCGATGCGC ACGATTTCGC GGCCGCGCTG GCCGGGCACG GCGTACTGAC CAAGGACACC TACGGCAACG TGGTCCGCCT GACCCCGCCG CTGGTGATCG CGCAGCAGGA GCTGGAGCTG GCGCGGGACG TCATCCGCCG CACGCTGGCC GACTGGCCGC GCCGCAAGGC GGCCTGA
|
Protein sequence | MTTAATHPSY ALETRYGARN YAPLPVMLER GEGVWLFDTA GRRYLDMMSA YSAVSFGHSH PRLVAALVEQ AGRLTLTSRA FHNTELGPFL ADVCRITRMD RALPMNTGAE AVETAIKAAR KWAREVKGTP PDAAEIIVFD NNFHGRTTTI VGFSSHEQYR YGFGPFAAGF RRIPFGDAEA LKAAIGPHTG AILIEPIQGE GGIVVPPPGY LKLARDLATQ HNALLVCDEV QTGLGRTGDV LASWHEDVQP DLVVLGKALG GGMVPVSAIA GREDVIGVFQ PGDHGSTFGG NPLAAHIGRA ALALLQEAQL PRHAARLGEA FIAELQSLIG HGVRQVRGRG LMIGLQLDAD IDAHDFAAAL AGHGVLTKDT YGNVVRLTPP LVIAQQELEL ARDVIRRTLA DWPRRKAA
|
| |