Gene RSc0113 details

Gene Information

• Locus tag: RSc0113
• Symbol: thiC
• ID: 1218916
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: -
• Start bp: 130368
• End bp: 132263
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 637236470
• Product: thiamine biosynthesis protein ThiC
• Protein accession: NP_518234
• Protein GI: 17544832
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 0.285617
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCCCAAG CCAAAAACGC CCCCGCCGCC TCATTCGACT CGCTGCAGAC CGAGCTCGAC 
CAGAAATTCG CCTACCCGGC CTCCAGCAAG ACCTACATCG CCGGCAGCCG CCCAGACCTG 
CGCGTGCCGA TGCGCACCAT CAAGCAGACC GCCACGCGCA CCGACCAGGG CGAAATGCTG 
AACCCGCCGA TTCCCGTGTA CGACACCTCG GGCCCGTACT CCGACCCCGA CGTGCACATC 
GACCTGAAGG CGGGCCTTGC CCCGCTGCGC GCCAAGTGGA TCGACGAGCG CGGCGACACC 
GTGGTGCTGC CGAGCCTGTC GTCGGAATAC GGCCAGGCAC GCGCGCATGA CCCGGCCACG 
GCCCACCTGC GCTTTGCGCA ACTGACCAAC CCGCGCCGCG CCAAGCCGGG CGCGAACGTG 
AGCCAGATGC ATTACGCGCG CCGCGGCATC ATCACGCCCG AGATGGAATA TGTCGCGTTG 
CGTGAATCGC TGAACCTGCA GGCGCTGCAA GACAAGCCCG AGTACCGCAA GCTGCTCAAG 
CAGCATCCGG GCTTCTCGTA CGGCGCCAAC CTGCCGCAGC GCCCGGAAGA CATCACGCCG 
GAATTCGTGC GCCAGGAAAT CGCCGCCGGC CGCGCCATCA TCCCGGCCAA CATCAACCAC 
GTGGAGCTGG AGCCGATGGC CATCGGCCGC AACTTCCGCG TGAAGATCAA CGGCAACCTG 
GGCAACTCGG CGGTCACCTC GTCGCTGGCC GAGGAAGTGG AAAAGATGGT GTGGTCGATC 
CGCTGGGGCG CCGACACGAT CATGGATCTG TCCACCGGCA AGCACATCCA CGAGACGCGC 
GAATGGATCC TGCGCAACTC GCCGGTGCCC ATCGGCACGG TGCCGATCTA CCAGGCGCTG 
GACAAGACCG GCGGCGTGGC CGAAGACCTG ACGTGGGAGA TGTTCCGCGA CACCCTCATC 
GAGCAGGCCG AGCAGGGCGT GGACTACTTC ACCATCCACG CCGGCGTGCT GCTGCGCTAT 
GTGCCGCTCA CGGCCGACCG CATCACCGGC ATCGTCTCGC GCGGCGGCTC GATCATGGCC 
AAGTGGTGCC TGGCGCATCA CAAGGAGAAC TTCCTGTACA CGCACTTCGA CGAGATCTGC 
GAAATCATGA AGGCGTACGA CGTGTCGTTC AGCCTGGGTG ACGGCCTGCG CCCGGGCTGC 
ATCGCCGACT CGAACGACGC CGCGCAGTTC GGCGAGCTGT ACACGCTGGG CGAGCTGACC 
AAGAAGGCGT GGGAGCACGA CGTGCAGGTC ATGATCGAAG GCCCGGGCCA CGTGCCGCTG 
CAGCGCGTGC AGGCCAACAT GGACGAAGAG CTCAAGCACT GCTTCGAGGC CCCGTTCTAC 
ACGCTGGGCC CGCTGGTGAC CGACATCGCT CCGGGCTACG ACCACATCAC CAGCGGCATC 
GGCGCGGCCA ACATCGGCTG GTACGGCACC GCCATGCTGT GCTACGTCAC GCCCAAGGAG 
CACCTGGGCC TGCCGGACAA GGAAGACGTG CGCGAAGGCA TCATCACCTA CAAGATCGCC 
GCGCATGCGG CCGACCTTGC GAAGGGCTGG CCGGGCGCGC AGCTGCGCGA CAACGCGCTG 
TCGAAGGCGC GTTTCGAGTT CCGCTGGGAA GACCAGTTCA ACCTCGGCCT CGACCCGGAA 
AAGGCGCGCG CCTTCCACGA CGAGACCCTG CCGGCCGAAG GCGCCAAGAT CGCCCACTTC 
TGCTCGATGT GCGGGCCGAA ATTCTGCTCG ATGAAGATCA CGCAGGAAGT GCGCGACTAC 
GCCGCCTCGC TCGACGCGAA CGCCACCGCC GCGGAGCATG GCATGGAAGA AAAGTCGATC 
GAGTTCCGCA AGGCCGGCGC AAAGATTTAC AGCTGA 

 

Protein sequence

MPQAKNAPAA SFDSLQTELD QKFAYPASSK TYIAGSRPDL RVPMRTIKQT ATRTDQGEML 
NPPIPVYDTS GPYSDPDVHI DLKAGLAPLR AKWIDERGDT VVLPSLSSEY GQARAHDPAT 
AHLRFAQLTN PRRAKPGANV SQMHYARRGI ITPEMEYVAL RESLNLQALQ DKPEYRKLLK 
QHPGFSYGAN LPQRPEDITP EFVRQEIAAG RAIIPANINH VELEPMAIGR NFRVKINGNL 
GNSAVTSSLA EEVEKMVWSI RWGADTIMDL STGKHIHETR EWILRNSPVP IGTVPIYQAL 
DKTGGVAEDL TWEMFRDTLI EQAEQGVDYF TIHAGVLLRY VPLTADRITG IVSRGGSIMA 
KWCLAHHKEN FLYTHFDEIC EIMKAYDVSF SLGDGLRPGC IADSNDAAQF GELYTLGELT 
KKAWEHDVQV MIEGPGHVPL QRVQANMDEE LKHCFEAPFY TLGPLVTDIA PGYDHITSGI 
GAANIGWYGT AMLCYVTPKE HLGLPDKEDV REGIITYKIA AHAADLAKGW PGAQLRDNAL 
SKARFEFRWE DQFNLGLDPE KARAFHDETL PAEGAKIAHF CSMCGPKFCS MKITQEVRDY 
AASLDANATA AEHGMEEKSI EFRKAGAKIY S