| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0104 |
|---|
| Symbol | |
|---|
| ID | 1218907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 119027 |
|---|
| End bp | 121909 |
|---|
| Gene Length | 2883 bp |
|---|
| Protein Length | 960 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637236461 |
|---|
| Product | putative hemolysin-type calcium-binding protein |
|---|
| Protein accession | NP_518225 |
|---|
| Protein GI | 17544823 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGTG CATATCTGGA CACTTTGGAA AAAATCGCCG AGGAGAATCG AAAACTCACC
GGCAATGACG AAGTCAATAG GGACATTCAA GCCAAAGAGG TCTGGGATTT CCACAGGGAG
GTTTTCCAAA AAAACGGCCT GGGTGTGGAA AACTGGACCC TAGACTCCGT CTTCAAAACC
ATCCAGCAAA CCCAAGGCGA CGACGCCCTG GAAGCCTATT GGGAAAGCCT GCGCGATACC
CAAGGCGAAG GGATGATGGC CACGCTGTTG AACATCCGCA CGATGTACAA CATGCACGAA
AGCATCGACA GCGCCGACCC CGCCATCAGC AAACTCGCCA GAAACTGGAT GGAGTTGGTA
CCCGGCATCT TCAGCTCCGA GCAGTTCATG CGCAGCATCA AGGTGCTGCT CAGACTTCCC
GACGTCAAAT CCACACTGAA CGCCATCGAC GATCTGGTCA ACCAGCTCTT CCGCAGCGTG
CAATTCGACA GCGGCCGCGA CCCGCTCGTG GTCGATCTGG GCAAGGGCAT CCGAGCCACC
GGCGTCGATG ACAGCAAGGT CCTGTTCGAT CTCGCCAACG CCGGCCAGAA GGAAGCGGTC
GGATGGATCG CCTCCGGCGG CTTCCTCGTC AACACTGCGG ATGGCCCCGT CACCAGCGGC
GCCCAACTCT TCGGCGATGC CCGCGCATTG CCCGACGGAT CGCTCGCCGC CAACGGCTTC
CAGGCGCTCG CCCCGCTGGA CAGCAACGCC GACGGCCACA TCAACGCCAG CGACACCGCC
TTCGGCAAGC TCGCGATCTG GACCGATACC AATCAGGACG GCATCGAGCA AGCCGACGAA
GTGTTTCTGC TCAGCAAGCT CGGCATCCAG GACATCGACC TGACCAGCGA GACCAGCACC
TTCCAGAACA TCGGCGGCGG CAACGTCGTC ACCGGCAAGG CAAAGATCAC CTGGGCCGAC
GGCCACCAGA CCGACATCGT CGAAGCCAAC CTCGTCACCA ATGGCTTCTA CACGGTCTTC
ACCGATAACG TGACGCTCAC ACCAGAACAG GCCGCGCTGC CCTTTGTTCG CGGCAGCGGA
CAAGTCCGGG ATACCCGGCA GGCTGCCGCA CGCTCCCCAG ATTTCTCGGC GATGCTGCAG
CAGTACGCCG CCGCAAACAC CCGTGCCGAG CAACTCGCGC TGCTGCCCGC GCTGATCGAC
GCATGGGCAG CCACCAGCTC GTTCAAGTCG CTCATGCAGC GCAACACCTA CGCCAATGAC
AGCGTCAACT ATGAATACGC GTTCACAGGT GTTGCGCACT ACCAGTCGAC CACCCTGGGC
TATGACGCGC TGATAGCCAA GAGCAACTGG ACCGCCGAGT ACAGCAAGTG GACCCATCTG
GTCGACATCC TGGAGAAGTT CAACGGCCAG ACGCTGTTTT CCGTCGATTC CGGCTGGATG
TGGGGCCATA ACCGTGCCTT CGTGTCCGCC GTCAACACGG ATGGATCGAC CAGTGCTTAT
AACGGTGCCA GCCCGCAGGC TGGTGCGCTG CTCCAAGCCA CCGTGCTGCA GATATCCCTT
TCCGACCAGC AGATGGCACG CCTGCAGCAA AGCTACGATG CCCTGCTGGA CTCTGTCTAC
GGCGGCCTGG TCCTGCAGAC CCGCCTGGAC AAATACGTCC GCATCCTCCA GTCCGACCAC
CCGGCAGATG TACTCGCTGC GCTACAAGCC GCGTATGACC GGAATCCAGT CAACGGCGCA
TCGGATGCGA TCGACCTGCT CAAGTATGGC AGCGCCGCGC TGGACAAGGC CGGCGTCTCC
CTGGCGCCGA CGCTCCAGTC CATGGCGCAA GACTTGGACA GCCGGGGCCT GCTCTCGACC
TGGCTCGCCG ACAACCCGGG CATCCACTAC ACGGCCCCCG GCCAAGCCGC CGCTATCGGC
AAGACTGGCG AACTGAACGG CCTGTTCATT CTGACCGGTC CCACCCAGAA AGCCGACCCC
GTCCAGGCCA GCGCGGGACA GGGCAGCCAA GGCAACGTGT TCTTCGCGCT GCACGGCAAC
ACCACCGTGG ATGCCAGTAA GGGGGACAAC CAGCAGTTCT TCGGCGGCGA TGGTCCAAGC
CGGTTCGTTG GCGGCACCGG AGCCAACCGC TTCCAGGGCG GCGCCGGAGA CATGTGGATG
GACGGCCACC TCGGCTCAGC CGGCACATTT ACGGGCGGCA AGGGCAACGA CACCATGATC
GGTGGCACGG GGCTGAACAT CTTCTCCGGC GGCGGCGGTG ATGACGCCAT CACGTCGAAC
GCCGACGCCG TCAGCCTCAT CGATGGCGGG ATAGGCAACG ATACGATCCG GGTCAGCGGC
GGCGGTATGG CCTCTATCGA TGGTGGCGCT GGCGACGACA TCATCAGAAT CGATCCCTAC
GGCGCCTCTC AAGGTGCCGA CATCATGGGC GGCACCGGCG ACGACCAGAT CAGCCTCGGC
TACTACAGCA CCACCCTACG ATTCAACCGC GGTGATGGCC ATGACACCGT TTCGTCCATC
GCCAACGCCG GCAACAAGAC CATCGTCTTC GGCCCCGGCA TCAGCGCCGC CGACCTCTCC
GCCACCCGCG TTGGCAACGA CATGGTCCTG AACGTCGGCG CCAATGGTGA CGCTATCACC
ATCACGAACT GGTTCTTGTT GGATGGCTCC AAGCGCATCG ATACCGCCGT CTTCGCCGAT
GGCACCCGAT GGAATGCCGA CAACTTCCGC CGCCTCATCA CCACCGTAAC CGGTACCGCC
GGTGACGACA CCATCAACGG CTGGCAGGGC GATGACGTCC TCGTCGGTGG CGACGGCAAC
GACACCCTAG TGTCCCGTTC CGCTAATTCG TTCGCAAAGT CTGCTGAGCT TGGAGAGGAT
TGA
|
|---|
| Protein sequence | MARAYLDTLE KIAEENRKLT GNDEVNRDIQ AKEVWDFHRE VFQKNGLGVE NWTLDSVFKT
IQQTQGDDAL EAYWESLRDT QGEGMMATLL NIRTMYNMHE SIDSADPAIS KLARNWMELV
PGIFSSEQFM RSIKVLLRLP DVKSTLNAID DLVNQLFRSV QFDSGRDPLV VDLGKGIRAT
GVDDSKVLFD LANAGQKEAV GWIASGGFLV NTADGPVTSG AQLFGDARAL PDGSLAANGF
QALAPLDSNA DGHINASDTA FGKLAIWTDT NQDGIEQADE VFLLSKLGIQ DIDLTSETST
FQNIGGGNVV TGKAKITWAD GHQTDIVEAN LVTNGFYTVF TDNVTLTPEQ AALPFVRGSG
QVRDTRQAAA RSPDFSAMLQ QYAAANTRAE QLALLPALID AWAATSSFKS LMQRNTYAND
SVNYEYAFTG VAHYQSTTLG YDALIAKSNW TAEYSKWTHL VDILEKFNGQ TLFSVDSGWM
WGHNRAFVSA VNTDGSTSAY NGASPQAGAL LQATVLQISL SDQQMARLQQ SYDALLDSVY
GGLVLQTRLD KYVRILQSDH PADVLAALQA AYDRNPVNGA SDAIDLLKYG SAALDKAGVS
LAPTLQSMAQ DLDSRGLLST WLADNPGIHY TAPGQAAAIG KTGELNGLFI LTGPTQKADP
VQASAGQGSQ GNVFFALHGN TTVDASKGDN QQFFGGDGPS RFVGGTGANR FQGGAGDMWM
DGHLGSAGTF TGGKGNDTMI GGTGLNIFSG GGGDDAITSN ADAVSLIDGG IGNDTIRVSG
GGMASIDGGA GDDIIRIDPY GASQGADIMG GTGDDQISLG YYSTTLRFNR GDGHDTVSSI
ANAGNKTIVF GPGISAADLS ATRVGNDMVL NVGANGDAIT ITNWFLLDGS KRIDTAVFAD
GTRWNADNFR RLITTVTGTA GDDTINGWQG DDVLVGGDGN DTLVSRSANS FAKSAELGED
|
|---|
| |