| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0087 |
|---|
| Symbol | |
|---|
| ID | 1218890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 100460 |
|---|
| End bp | 101464 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637236444 |
|---|
| Product | putative NADH-ubiquinone oxidoreductase protein |
|---|
| Protein accession | NP_518208 |
|---|
| Protein GI | 17544806 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.645522 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACCT CCAACCTGCT CGTGCTGGGC GGCACCGGAT TCATCGGCAC CCAGCTGCTG
TCGCGCCTCG TCACCGAAAC CTTTGCCGCG CCCGGACTGC CCGACGGCCG CGTCATCGTG
CCGACCCGCG ACGCGGAATC TGCCCGGGCA CACAACCTGA CGCTGCTGCC GCGCGTGGAC
GTGATGGAAG CCGACGTGCA CGCCGACGAC GCCCTCGATG CACTGTTCCT CGCGCTCACC
GAGGGCGGCG GCGAACACTG CGCCGTGATC AACCTGGTGG GCGTCCTGCA GGACGTGCGC
GCCGCGCCCT ACGGCCCAGC CTTCCGCCGC GCCCATGTCG ACCTGCCGCG CCGCGTGGTG
GACGCCTGCC GACGCCATGG GGTGAAGCGC CTGCTGCACA TGAGCGCGCT GGGCGCCGAT
CCGGCCGGCC CATCGATGTA CCAGCGCAGC AAGGGCGACG GCGAGCGCAT CGTCACCGGC
AGCGACCTGG ACTGGACGGT GTTCCGCCCG TCCGTCGTGT TCGGCCCCGG CGATCACTTC
CTCAACCTGT TCGCGCGCCT GCAGCGCCTC GCGCCGTTCG TGCCGCTGGC CCGCGCCGAA
GCGCGCTTCC AGCCCGTGTA CGTGGATGAC GTGGCCGCGG CGTTCGCCCA CGCGCTGGAC
AACCCGGCCA CCTTCGGCCA CGTCTATCCG CTGGTCGGCC CGCGCGTCTA CACGCTGGCC
GAGCTGGTGC GCTTCGCCGG CACGGCCAGC GGCCACCCGC GCTGGATCGT GCCGCTGTCG
GACGCCATGG GCCGCCTGCA GGCCACGCTG TTCGAACAGT TGCCCGGCTC GCCGCTCTCG
CGCGACAACC TCGACTCCAT GCGCATCGAC AACATCAGCG CCGAGCCGAT CGCCCCGGAG
CTCGACATCC ACCCGCTGGG CATGGAAGCC GTGATGACCG CGACCCTGGC TGGGCGCGGC
CCCAACGGCA GGCTCGGCGA TGCGCGGGCG CGTGCCCATC GCTAG
|
|---|
| Protein sequence | MRTSNLLVLG GTGFIGTQLL SRLVTETFAA PGLPDGRVIV PTRDAESARA HNLTLLPRVD
VMEADVHADD ALDALFLALT EGGGEHCAVI NLVGVLQDVR AAPYGPAFRR AHVDLPRRVV
DACRRHGVKR LLHMSALGAD PAGPSMYQRS KGDGERIVTG SDLDWTVFRP SVVFGPGDHF
LNLFARLQRL APFVPLARAE ARFQPVYVDD VAAAFAHALD NPATFGHVYP LVGPRVYTLA
ELVRFAGTAS GHPRWIVPLS DAMGRLQATL FEQLPGSPLS RDNLDSMRID NISAEPIAPE
LDIHPLGMEA VMTATLAGRG PNGRLGDARA RAHR
|
|---|
| |