Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0070 |
Symbol | def |
ID | 1218872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 80019 |
End bp | 80528 |
Gene Length | 510 bp |
Protein Length | 169 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637236426 |
Product | peptide deformylase |
Protein accession | NP_518191 |
Protein GI | 17544789 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCTAC TGAATATCCT GCAATACCCC GATCCGCGAC TGCACAAGGT CGCCAAGCCG GTGGCCGTCG TGGACGACCG CATCCGCAAG CTGGTGGCCG ATATGGCCGA GACGATGTAT GACGCGCCCG GCATCGGCCT GGCCGCCACG CAGGTCGACG TGCACGAGCG GGTGATCACG ATCGACGTAT CGGAATCGCG CGACGAGCTG CGCGTCTTCA TCAACCCGGA GATCGTCTGG GCGAGCGAGG CGCGCAAGGT CTGGGACGAA GGCTGCCTGT CGGTGCCCGA CATCTACGAC AAGGTGGAGC GGCCGGACCG GGTGCGCGTG CGTGCGCTCA ACGAGAAGGG CGAATCCTTC GAGCTGGAAA CCGACGGGCT GCTGGCGGTT TGCATCCAGC ATGAGATGGA TCACCTGATG GGCAAGGTGT TCGTCGAGTA CCTGTCACCG CTCAAGCAGA ACCGCATCAA GATCAAGCTC AAGAAGCACC AGCTCGAGCG CGCGCGCTGA
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Protein sequence | MALLNILQYP DPRLHKVAKP VAVVDDRIRK LVADMAETMY DAPGIGLAAT QVDVHERVIT IDVSESRDEL RVFINPEIVW ASEARKVWDE GCLSVPDIYD KVERPDRVRV RALNEKGESF ELETDGLLAV CIQHEMDHLM GKVFVEYLSP LKQNRIKIKL KKHQLERAR
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