| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0068 |
|---|
| Symbol | smf |
|---|
| ID | 1218870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 77370 |
|---|
| End bp | 78575 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637236424 |
|---|
| Product | SMF protein |
|---|
| Protein accession | NP_518189 |
|---|
| Protein GI | 17544787 |
|---|
| COG category | [L] Replication, recombination and repair
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake |
|---|
| TIGRFAM ID | [TIGR00732] DNA protecting protein DprA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCGATG CCTCACAGGT CGCGGCGCCC GCCGCGACCG CTCCCGCCGA TCCCCTCGAC
GCCACACGCG ATCCCGCCGA GCTGGCCGCT TGGCTGCGGC TGACGGAAAC GCCGGGCATC
GGCCCCGTCG CCGCGCGGCA ACTGCTGGCC GCTTTCGGGC TACCCCAGGA CATCTTCCGT
CAATCCTATG CGGCACTCGC CAAGGTGCTG CCTGAACGAC AAGCGCGCGC GCTGCTGGCC
GAGCCGGACG AAGCGCTCGC CGCGCTGATC GAGCGGACTG CCGCCTGGGC CGCCGAACCG
GGCAATGCCA TCTTCACGCT GGCCGACCGT GGCTACCCGC CCCGGCTGCT GGAACTCCCC
GATCCGCCGA CGCTGCTGTA TGCCAAGGGC GATGTCTCGC TGCTGCGGGC TGCGGCGGTG
GGCGTGGTCG GCGCGCGCAG CGCCACCGCG CAGGGTCTGG AGAACGCCCG CGCCTTCGCG
CAGGCGCTGT CCGCCGCCAA CGTGACGATC GTCTCGGGGC TGGCGCTGGG CATCGATGCC
GCCGCACACG ACGGCGCGCT GACCGGGCCC GGCAGCACCA TCGCGGTGGT CGGCACGGGG
CTGGACATGG TCTACCCGGC CCGGAACCGA GCCCTGGCAC ACCACATCGC CGAAGCCGGG
CTGATCCTGT CGGAGTACCC GCTCGGCATG GGGGCACGGG CCGAGAACTT CCCGCGCCGC
AACCGGCTGA TCGCCGGGCT CGCGCGCGGA CTGCTGGTGG TGGAGGCCGC CGCGCAATCC
GGTTCGCTGA TCACCGCCCG GCTGGCCGCC GAGCAGGGGC GCGATGTGTT CGCCATTCCC
GGCTCGATCC ATTCGCCGCT GGCCAAGGGC TGCCACCTGC TGATCAAGCA GGGTGCCAAG
CTGGTCGAGA CGGCGGCCGA CATCCTGGAC GAACTGGGCT GGAGCCGCAC ACCGACGCCA
GCGACACGGA CACCGCGCAC GGCCGCCCAG GCACCTGTCC CCGCATCCGC CCCGGCCGCA
CGTCCGGCGG CAACGGCCGC GGAAACCGCG TTGCTCGATG CGCTCGGCTT CGACCCGGTC
GACCTCGACA CCCTGTGCGA ACGCACCGGC CAAACCGCGG CCAACCTGTC GGCACAACTG
CTGGCGCTGG AGCTGGCAGG CCACATCGAG CGCCAACCGG GCGGACGCTT TCTGCGGCTG
CCATAG
|
|---|
| Protein sequence | MIDASQVAAP AATAPADPLD ATRDPAELAA WLRLTETPGI GPVAARQLLA AFGLPQDIFR
QSYAALAKVL PERQARALLA EPDEALAALI ERTAAWAAEP GNAIFTLADR GYPPRLLELP
DPPTLLYAKG DVSLLRAAAV GVVGARSATA QGLENARAFA QALSAANVTI VSGLALGIDA
AAHDGALTGP GSTIAVVGTG LDMVYPARNR ALAHHIAEAG LILSEYPLGM GARAENFPRR
NRLIAGLARG LLVVEAAAQS GSLITARLAA EQGRDVFAIP GSIHSPLAKG CHLLIKQGAK
LVETAADILD ELGWSRTPTP ATRTPRTAAQ APVPASAPAA RPAATAAETA LLDALGFDPV
DLDTLCERTG QTAANLSAQL LALELAGHIE RQPGGRFLRL P
|
|---|
| |