Gene RSc0063 details

Gene Information

• Locus tag: RSc0063
• Symbol: mdrB
• ID: 1218865
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 69714
• End bp: 70856
• Gene Length: 1143 bp
• Protein Length: 380 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 637236419
• Product: rod shape-determining (RODA protein) transmembrane
• Protein accession: NP_518184
• Protein GI: 17544782
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG0772] Bacterial cell division membrane protein
• TIGRFAM ID: [TIGR02210] rod shape-determining protein RodA

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.913941
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.999134
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGACAAGC GCCGCGCATT CAACGTCATC AAGTCGCTCT TCACCGGCTT CGACAAGCCG 
CTGGCGCTGA TCGTCTTCCT GCTGCTCGGC ACGGGGCTGA TCGCTCTGTA CTCGGCGGCC 
ATCGACATGC CCGGCCGGGT GGAAGACCAG GTGCGCAACA TCCTGCTGTC GTTCGTGGTG 
ATGTGGATCA TCGCCAACCT GCCGCAGCAG ACGCTGATGC GCTTTGCCGT ACCGCTCTAC 
ACCGCGGGCG TGGCCCTGCT GATCGGCGTG GCGATGTTCG GGCTGATCCG CAAGGGCGCG 
CGGCGCTGGC TCAACATCGG CGTGGTGGTG CAGCCCTCCG AGATCATGAA GATCGCCATG 
CCGCTGATGC TGGCGTGGTA CTTCCAGAAG CGCGAGGGGG TGATCCACTG GTATGACTAC 
CTCGCCGCCG CCGTGCTGCT GCTGGTGCCG GTCGGCCTGA TCGCCAAGCA GCCCGACCTG 
GGCACGGCGC TGCTGGTGCT GGCCGCGGGC ATCTACGTGA TCTACTTCGC GGGGCTGTCG 
TGGCGGCTGA TCGTGCCGGT GATGGTGATC GCCGTGACGG CGGTGACGCT GGTGGTGTCG 
TTCGAGTCGC GCATCTGCGC GCCGGGCGTC AACTGGCCGA TCCTGCACGA CTACCAGCAG 
CACCGCATCT GCACGCTGCT CGACCCGACC ACCGATCCGC TCGGCAAGGG TTTCCACACC 
ATCCAGTCGA TCATCGCGAT CGGCTCGGGC GGGGTGACCG GCAAGGGCTG GCTCAAGGGC 
ACGCAGACGC ACCTGGAGTT CATCCCCGAG AAGCACACCG ACTTCATCTT CGCGGTCTAT 
TCCGAGGAGT TCGGGCTGGT GGGCAACGCG ATCCTGGTGT TCCTGTACCT GCTGCTGATC 
CTGCGCGGGC TGGTCATCGC CGCCAACGCG GGCACGCTGT TCGGGCGCCT GCTGGCCGGG 
TCGATCACGC TGATCTTCTT CACCTACGCC TTCGTCAACA TGGGCATGGT GAGCGGCATC 
CTGCCGGTGG TGGGCGTGCC GCTGCCGCTT GTCAGCTACG GCGGCACCGC GCTCGTCACG 
CTGGGGATGG GGCTGGGCAT CCTGATGAGC ATCGCGCGGC AGAAGCGCTT CGTGCAGACG 
TAG 

 

Protein sequence

MDKRRAFNVI KSLFTGFDKP LALIVFLLLG TGLIALYSAA IDMPGRVEDQ VRNILLSFVV 
MWIIANLPQQ TLMRFAVPLY TAGVALLIGV AMFGLIRKGA RRWLNIGVVV QPSEIMKIAM 
PLMLAWYFQK REGVIHWYDY LAAAVLLLVP VGLIAKQPDL GTALLVLAAG IYVIYFAGLS 
WRLIVPVMVI AVTAVTLVVS FESRICAPGV NWPILHDYQQ HRICTLLDPT TDPLGKGFHT 
IQSIIAIGSG GVTGKGWLKG TQTHLEFIPE KHTDFIFAVY SEEFGLVGNA ILVFLYLLLI 
LRGLVIAANA GTLFGRLLAG SITLIFFTYA FVNMGMVSGI LPVVGVPLPL VSYGGTALVT 
LGMGLGILMS IARQKRFVQT