Gene RSc0061 details

Gene Information

• Locus tag: RSc0061
• Symbol: mreD
• ID: 1218863
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 66750
• End bp: 67262
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637236417
• Product: rod shape-determining MRED transmembrane protein
• Protein accession: NP_518182
• Protein GI: 17544780
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2891] Cell shape-determining protein
• TIGRFAM ID: [TIGR03426] rod shape-determining protein MreD

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.211296
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACTCGC CCCAATATCT GCTGCGCCCG GTCAACCCCG GCTTCATCGC CTTCAGCTTT 
GTGGTGGCGT TCCTGTTCAA TCTGATGCCG TGGGGACACC TGCAGTGGAT CCCGGACCTG 
GTGGCGCTGG TGCTGGTGTT CTGGAACATC CACCAGCCGC GCCGCGTGGG CATGGTAGTG 
GCCTTCCTGC TGGGCCTGCT GATGGACGTG CACGAGGCGC GCCTGCTGGG CGAGCATGCG 
ATGGCGTACA CGCTGCTGTC GTACTTCGCC ATCACCATCC ACCGCCGCGT GCTGTGGTTC 
TCGGTGCTGT CGCAGGCGCT GCATGTCCTG CCGCTGCTGC TGCTCGCGCA CGCGGTGCCG 
ATCCTGATCC GCCTGCTGAT GGGCGCGCAC CTGCCCGATT GGCAGGTGGC GCTGCCGCCG 
CTGATCGAAG CCGCGCTGTG GCCCGTCGCG AACGCCATCC TGCTGGCGCC GCAGCGCCGT 
CCGGAGAGCG TCGACGAGAC GCGCCCGATC TGA 

 

Protein sequence

MNSPQYLLRP VNPGFIAFSF VVAFLFNLMP WGHLQWIPDL VALVLVFWNI HQPRRVGMVV 
AFLLGLLMDV HEARLLGEHA MAYTLLSYFA ITIHRRVLWF SVLSQALHVL PLLLLAHAVP 
ILIRLLMGAH LPDWQVALPP LIEAALWPVA NAILLAPQRR PESVDETRPI