| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0040 |
|---|
| Symbol | |
|---|
| ID | 1218842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 43274 |
|---|
| End bp | 43852 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637236396 |
|---|
| Product | response regulator transcription regulator protein |
|---|
| Protein accession | NP_518161 |
|---|
| Protein GI | 17544759 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4567] Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAAC CCGCCCCCTT CCTGATCCTC GACGACGATG ACGTGTTCGC GCAGACGCTC
GCGCGTGCCC TGACCCGCCG CGGCTTCGCG CCGCAGATCG CCCATACCGG CGGCGAGGCG
CTGTCGCTGG CCCGCCAGAC GCCCTTCGCG TACGTGACGG TCGACCTGCA CCTGGCCGCC
AGCGACCGGG GCCTGATGCC GCACGGGGGC ACCGATTCCG GCCTGCACTG GATCGCCCCG
CTGCGCCAGG CGCTGCCCGA GGCGCGCATG CTGGTGCTGA CCGGCTATGC CAGCATCGCC
ACCGCCGTGC AGGCGGTGAA GCTGGGCGCG GACGAATACC TGGCCAAGCC GGCCAATGTC
GATTCGATCC TGCTCGCGCT GCAGGTGGGC GTGTCCGAAG CGGTGGCCGA GCAGACCATG
GAGAACCCGG CGCCGCTGTC GGTGGCGCGG CTGGAGTGGG AGCACATCCA GCGCGTGCTG
TCCGAGCACG GCGGCAACAT CTCCGCCACC GCGCGCGCGC TGAACATGCA CCGGCGCACG
CTGCAGCGCA AGCTGGGCAA GCGCCCGGTG GCCAAATAG
|
|---|
| Protein sequence | MQQPAPFLIL DDDDVFAQTL ARALTRRGFA PQIAHTGGEA LSLARQTPFA YVTVDLHLAA
SDRGLMPHGG TDSGLHWIAP LRQALPEARM LVLTGYASIA TAVQAVKLGA DEYLAKPANV
DSILLALQVG VSEAVAEQTM ENPAPLSVAR LEWEHIQRVL SEHGGNISAT ARALNMHRRT
LQRKLGKRPV AK
|
|---|
| |