Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0010 |
Symbol | acrB |
ID | 1218812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 8446 |
End bp | 11595 |
Gene Length | 3150 bp |
Protein Length | 1049 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637236366 |
Product | putative acriflavin resistance transmembrane protein |
Protein accession | NP_518131 |
Protein GI | 17544729 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.461171 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0539399 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAGT TTTTTATCGA TCGCCCGGTC TTTGCCTGGG TGCTCGCGCT GTTCATCATC GTGGCTGGGG CCATCTCGAT CACCCAGTTG CCGATCGCGC AGTACCCGAC CATCGCGCCG CCCTCGATCA TCATCACGGC AACCTACCCT GGCGCGAGCG CCAAAACGCT GGACGACGCC GTCACCAGCA TCATCGAGCA GGAAATGAAC GGTGCGGACG GCCTGCTCTA TATCGAGTCG GTCAGCCAGG CCGGTAACGG CCAGGCCACC ATCACCGTGA CGTTCAAGCC CGGCACCGAT CCGGCGCTGG CGCAGGTGGA CGTGCAGAAC CGCCTCAAGC GCGTGGAAGC GCGCCTGCCG TCGTCGGTGA CGCAGCAGGG CGTGCAGGTC GACAAGACCC GCTCCAACTT CCTGCTGTTC GCCACGCTGA TCTCGAAGGA CGGCAAGATG GACCCGGTCG CCCTGGGCGA CTACATCTCG CGCAACGTGC TCAACGAAGT CAAGCGCGTG CCCGGCGTCG GCCAGGCCGT GCTGTTCGGC ACCGAGCGCG CGATGCGCAT CTGGATCGAC CCGGCCAAGC TGGTCGGCTA CAAGCTGACG CCGACCGACG TCTACAACGC CATCCGCAAC CAGAACGCAC TGGTCTCGGC CGGCACGCTG GGCGACCTGC CGTCCACCTC CGACCAGCCC ATCGCGGCGA CGGTGGTGGT GGAGGGGCAG ATGACGACCA CCGAGCAGTT CGGCAACATC GTGCTGGTGT CCAAGCCGGA CGGCTCGCAG GTGCGCATCA AGGACGTGGC GCGCCTGGAG CTGGGCGGCC AGACCTACGC GACTTCCGCG CGGATCAACG GCCAGCCGAT CTCGGCCATC GGCGTGCAGC TCTCGCCGAC GGGCAACGCG CTGGGCACGG CCAAGGCGGT CAAGGCCAAG CTCGACGAGC TCTCCAAGTA CTTCCCTGCC GGCGTCGAGT ACAAGATCCC GTACGACACC TCCAAGTTCG TGCAGATCTC GATCGAGGAA GTGGTCAAGA CGCTGTTCGA GGCCATGGCG CTGGTGTTCC TGGTGATGCT GGTGTTCCTG CAGAACATCC GCTACACCCT GATCCCGTCG ATCGTGGTGC CGATCTCGCT GCTGGGCGCC TTCGCCACCA TGAACGCGCT GGGCTTCTCG ATCAACGTGC TGACCATGTT CGGCCTGGTG CTGGCGATCG GTATCCTCGT CGACGACGCC ATCGTGGTGG TGGAAAACGT CGAGCGGATC ATGAGCCAGG AGGGCCTGCC CCCGCGCGAA GCGACTCGCA AGGCCATGGG CCAGATCACC GGCGCCATCA TCGGCATCAC GCTGGTGCTG ATGGCGGTGT TCATCCCGAT GGCGTTCTTC TCGGGCTCGG TGGGCGCGAT CTATCGCCAG TTCTCGCTGT CGATGGTGGC CTCGATCTTC TTCTCGGCGC TGATGGCCCT GACGCTGACG CCCGCGCTGT GCTCGACGCT GCTCAAGCCG ATCGAGAAGG GCTCGCACCA TGAGAAGAAG GGCTTCTTCG GCTGGTTCAA CCGCATGTTC ACCAGCACCA CGGACCGCTA CCAGAGCCTC GTGGAGCGCG TGCTGAAAAA GACCTTCCGC TACATGGTGA TCTACGGCGC GCTGATCGCC GCGGTGGTGT TCCTGTTCAT GCGCCTGCCG TCGTCGTTCC TGCCGAACGA AGACCAGGGC TACATCATCA CCAACATCCA GTTGCCGCCG GCGGCATCCG CCAACCGCAC GCTGGAGGTG ATCAAGCACG TCGAGAACTA CTACCAGCAC GAGAAGGCCG TCGAGAACAT CGTGGCGGTG CAGGGCTTCA GCTTCTCGGG CAACGGTCCC AACGCCGCGC TGGTGTTCAC CACGCTCAAG GACTGGAGCT CGCGCGGCGC CGACCAGAGC GCCGACGCCG TGGCCGGCCG CGCCTTCGGC GCGCTGTTCG GCGGCATCCG CGATGCGATC GTGTTCCCGC TGAACCCGCC GCCGATCCCG GAACTGGGCA ACGCGACCGG CTTCACGTTC CGCCTGCAGG ACCGCGGCGG CCTCGGCCAC GACGCGCTGA TGGCCGCGCG CAACCAGCTC CTGGGCATGG CCGGCCAGAG CAAGGTCCTG AAGAACGTGC GCCCGGACGG CCTGGAAGAC TCGCCCCAGT ACCAGGTCGA CATCGACCGC GAAAAGGCCA ACGCATTGGG TGTGGCGTTC GCCGACATCA ACAACGTGCT GTCGACGGCG CTGGGCTCGG CCTACGCGAA TGACTTCCCG AACTACGGCC GCCAGCAGCG GGTGATCGTC CAGGCGGACA GGATCAACCG GATGCAGCCG GAAGACATCA TGAACCTGTA CGTGCGCAAC ACGCAGGGCA GCATGGTGCC GATGTCGGCG TTCGCCAAGG GTCACTGGGT GGTCGGCCCG GTGCAGCTGG TGCGCTACAA CGGCTATCCG TCAGTCCGCA TCTCGGGTGA CGCCGCCACC GGCGCCAGCA CGGGCGACGC CATGGACGAG ATGGAGCACC TGGCCTCCAG GCTGCCGGCC GGCATCGGCT TCGAGTGGAC GGGCCAGTCG CTGCAGGAAA AGTCCTCCGG CTCGCAGGCG CCCGCGCTGT ACGCGCTGTC GCTGCTGGCG GTGTTCCTGG TGCTGGCCGC GCTGTATGAG AGCTGGTCGA TCCCGGCCGC GGTGATCCTG GTGGTGCCGC TGGGCGTGCT CGGCGCACTG CTGGGTGTGA CGCTGCGCTT CATGCCCGAC GACGTGTACT TCAAGGTCGG CCTGATCGCG GTGGTGGGCC TGTCGGCCAA GAACGCCATC CTGATCATCG AATTCGCGAA GGACCTGCAG GCGCAAGGCA AGGGCCTGAT CGAAGCGACA CTGGAAGCGG TGCACCTGCG GTTCCGCCCG ATCATCATGA CGTCGTTCGC CTTCATCCTG GGCGTGCTGC CGCTGGCGAT CGCCACCGGC GCCAGTTCCG CCAGCCAGCG CGCCATCGGT ACCGGCGTGA TGGGCGGGAT GATCACCGCG ACGGTGCTGG CCGTGGTGCT GGTGCCCGTG TTCTTCGTGG TGGTGCGCCG CATATTCAAG GGCAGTGAAC GCCAGCGCCG CCTGGATGCC GCACACCTCC CGCTGGACGA GGAAATCTGA
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Protein sequence | MAKFFIDRPV FAWVLALFII VAGAISITQL PIAQYPTIAP PSIIITATYP GASAKTLDDA VTSIIEQEMN GADGLLYIES VSQAGNGQAT ITVTFKPGTD PALAQVDVQN RLKRVEARLP SSVTQQGVQV DKTRSNFLLF ATLISKDGKM DPVALGDYIS RNVLNEVKRV PGVGQAVLFG TERAMRIWID PAKLVGYKLT PTDVYNAIRN QNALVSAGTL GDLPSTSDQP IAATVVVEGQ MTTTEQFGNI VLVSKPDGSQ VRIKDVARLE LGGQTYATSA RINGQPISAI GVQLSPTGNA LGTAKAVKAK LDELSKYFPA GVEYKIPYDT SKFVQISIEE VVKTLFEAMA LVFLVMLVFL QNIRYTLIPS IVVPISLLGA FATMNALGFS INVLTMFGLV LAIGILVDDA IVVVENVERI MSQEGLPPRE ATRKAMGQIT GAIIGITLVL MAVFIPMAFF SGSVGAIYRQ FSLSMVASIF FSALMALTLT PALCSTLLKP IEKGSHHEKK GFFGWFNRMF TSTTDRYQSL VERVLKKTFR YMVIYGALIA AVVFLFMRLP SSFLPNEDQG YIITNIQLPP AASANRTLEV IKHVENYYQH EKAVENIVAV QGFSFSGNGP NAALVFTTLK DWSSRGADQS ADAVAGRAFG ALFGGIRDAI VFPLNPPPIP ELGNATGFTF RLQDRGGLGH DALMAARNQL LGMAGQSKVL KNVRPDGLED SPQYQVDIDR EKANALGVAF ADINNVLSTA LGSAYANDFP NYGRQQRVIV QADRINRMQP EDIMNLYVRN TQGSMVPMSA FAKGHWVVGP VQLVRYNGYP SVRISGDAAT GASTGDAMDE MEHLASRLPA GIGFEWTGQS LQEKSSGSQA PALYALSLLA VFLVLAALYE SWSIPAAVIL VVPLGVLGAL LGVTLRFMPD DVYFKVGLIA VVGLSAKNAI LIIEFAKDLQ AQGKGLIEAT LEAVHLRFRP IIMTSFAFIL GVLPLAIATG ASSASQRAIG TGVMGGMITA TVLAVVLVPV FFVVVRRIFK GSERQRRLDA AHLPLDEEI
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