Gene RSc0010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0010 
SymbolacrB 
ID1218812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp8446 
End bp11595 
Gene Length3150 bp 
Protein Length1049 aa 
Translation table11 
GC content66% 
IMG OID637236366 
Productputative acriflavin resistance transmembrane protein 
Protein accessionNP_518131 
Protein GI17544729 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.461171 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0539399 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAGT TTTTTATCGA TCGCCCGGTC TTTGCCTGGG TGCTCGCGCT GTTCATCATC 
GTGGCTGGGG CCATCTCGAT CACCCAGTTG CCGATCGCGC AGTACCCGAC CATCGCGCCG
CCCTCGATCA TCATCACGGC AACCTACCCT GGCGCGAGCG CCAAAACGCT GGACGACGCC
GTCACCAGCA TCATCGAGCA GGAAATGAAC GGTGCGGACG GCCTGCTCTA TATCGAGTCG
GTCAGCCAGG CCGGTAACGG CCAGGCCACC ATCACCGTGA CGTTCAAGCC CGGCACCGAT
CCGGCGCTGG CGCAGGTGGA CGTGCAGAAC CGCCTCAAGC GCGTGGAAGC GCGCCTGCCG
TCGTCGGTGA CGCAGCAGGG CGTGCAGGTC GACAAGACCC GCTCCAACTT CCTGCTGTTC
GCCACGCTGA TCTCGAAGGA CGGCAAGATG GACCCGGTCG CCCTGGGCGA CTACATCTCG
CGCAACGTGC TCAACGAAGT CAAGCGCGTG CCCGGCGTCG GCCAGGCCGT GCTGTTCGGC
ACCGAGCGCG CGATGCGCAT CTGGATCGAC CCGGCCAAGC TGGTCGGCTA CAAGCTGACG
CCGACCGACG TCTACAACGC CATCCGCAAC CAGAACGCAC TGGTCTCGGC CGGCACGCTG
GGCGACCTGC CGTCCACCTC CGACCAGCCC ATCGCGGCGA CGGTGGTGGT GGAGGGGCAG
ATGACGACCA CCGAGCAGTT CGGCAACATC GTGCTGGTGT CCAAGCCGGA CGGCTCGCAG
GTGCGCATCA AGGACGTGGC GCGCCTGGAG CTGGGCGGCC AGACCTACGC GACTTCCGCG
CGGATCAACG GCCAGCCGAT CTCGGCCATC GGCGTGCAGC TCTCGCCGAC GGGCAACGCG
CTGGGCACGG CCAAGGCGGT CAAGGCCAAG CTCGACGAGC TCTCCAAGTA CTTCCCTGCC
GGCGTCGAGT ACAAGATCCC GTACGACACC TCCAAGTTCG TGCAGATCTC GATCGAGGAA
GTGGTCAAGA CGCTGTTCGA GGCCATGGCG CTGGTGTTCC TGGTGATGCT GGTGTTCCTG
CAGAACATCC GCTACACCCT GATCCCGTCG ATCGTGGTGC CGATCTCGCT GCTGGGCGCC
TTCGCCACCA TGAACGCGCT GGGCTTCTCG ATCAACGTGC TGACCATGTT CGGCCTGGTG
CTGGCGATCG GTATCCTCGT CGACGACGCC ATCGTGGTGG TGGAAAACGT CGAGCGGATC
ATGAGCCAGG AGGGCCTGCC CCCGCGCGAA GCGACTCGCA AGGCCATGGG CCAGATCACC
GGCGCCATCA TCGGCATCAC GCTGGTGCTG ATGGCGGTGT TCATCCCGAT GGCGTTCTTC
TCGGGCTCGG TGGGCGCGAT CTATCGCCAG TTCTCGCTGT CGATGGTGGC CTCGATCTTC
TTCTCGGCGC TGATGGCCCT GACGCTGACG CCCGCGCTGT GCTCGACGCT GCTCAAGCCG
ATCGAGAAGG GCTCGCACCA TGAGAAGAAG GGCTTCTTCG GCTGGTTCAA CCGCATGTTC
ACCAGCACCA CGGACCGCTA CCAGAGCCTC GTGGAGCGCG TGCTGAAAAA GACCTTCCGC
TACATGGTGA TCTACGGCGC GCTGATCGCC GCGGTGGTGT TCCTGTTCAT GCGCCTGCCG
TCGTCGTTCC TGCCGAACGA AGACCAGGGC TACATCATCA CCAACATCCA GTTGCCGCCG
GCGGCATCCG CCAACCGCAC GCTGGAGGTG ATCAAGCACG TCGAGAACTA CTACCAGCAC
GAGAAGGCCG TCGAGAACAT CGTGGCGGTG CAGGGCTTCA GCTTCTCGGG CAACGGTCCC
AACGCCGCGC TGGTGTTCAC CACGCTCAAG GACTGGAGCT CGCGCGGCGC CGACCAGAGC
GCCGACGCCG TGGCCGGCCG CGCCTTCGGC GCGCTGTTCG GCGGCATCCG CGATGCGATC
GTGTTCCCGC TGAACCCGCC GCCGATCCCG GAACTGGGCA ACGCGACCGG CTTCACGTTC
CGCCTGCAGG ACCGCGGCGG CCTCGGCCAC GACGCGCTGA TGGCCGCGCG CAACCAGCTC
CTGGGCATGG CCGGCCAGAG CAAGGTCCTG AAGAACGTGC GCCCGGACGG CCTGGAAGAC
TCGCCCCAGT ACCAGGTCGA CATCGACCGC GAAAAGGCCA ACGCATTGGG TGTGGCGTTC
GCCGACATCA ACAACGTGCT GTCGACGGCG CTGGGCTCGG CCTACGCGAA TGACTTCCCG
AACTACGGCC GCCAGCAGCG GGTGATCGTC CAGGCGGACA GGATCAACCG GATGCAGCCG
GAAGACATCA TGAACCTGTA CGTGCGCAAC ACGCAGGGCA GCATGGTGCC GATGTCGGCG
TTCGCCAAGG GTCACTGGGT GGTCGGCCCG GTGCAGCTGG TGCGCTACAA CGGCTATCCG
TCAGTCCGCA TCTCGGGTGA CGCCGCCACC GGCGCCAGCA CGGGCGACGC CATGGACGAG
ATGGAGCACC TGGCCTCCAG GCTGCCGGCC GGCATCGGCT TCGAGTGGAC GGGCCAGTCG
CTGCAGGAAA AGTCCTCCGG CTCGCAGGCG CCCGCGCTGT ACGCGCTGTC GCTGCTGGCG
GTGTTCCTGG TGCTGGCCGC GCTGTATGAG AGCTGGTCGA TCCCGGCCGC GGTGATCCTG
GTGGTGCCGC TGGGCGTGCT CGGCGCACTG CTGGGTGTGA CGCTGCGCTT CATGCCCGAC
GACGTGTACT TCAAGGTCGG CCTGATCGCG GTGGTGGGCC TGTCGGCCAA GAACGCCATC
CTGATCATCG AATTCGCGAA GGACCTGCAG GCGCAAGGCA AGGGCCTGAT CGAAGCGACA
CTGGAAGCGG TGCACCTGCG GTTCCGCCCG ATCATCATGA CGTCGTTCGC CTTCATCCTG
GGCGTGCTGC CGCTGGCGAT CGCCACCGGC GCCAGTTCCG CCAGCCAGCG CGCCATCGGT
ACCGGCGTGA TGGGCGGGAT GATCACCGCG ACGGTGCTGG CCGTGGTGCT GGTGCCCGTG
TTCTTCGTGG TGGTGCGCCG CATATTCAAG GGCAGTGAAC GCCAGCGCCG CCTGGATGCC
GCACACCTCC CGCTGGACGA GGAAATCTGA
 
Protein sequence
MAKFFIDRPV FAWVLALFII VAGAISITQL PIAQYPTIAP PSIIITATYP GASAKTLDDA 
VTSIIEQEMN GADGLLYIES VSQAGNGQAT ITVTFKPGTD PALAQVDVQN RLKRVEARLP
SSVTQQGVQV DKTRSNFLLF ATLISKDGKM DPVALGDYIS RNVLNEVKRV PGVGQAVLFG
TERAMRIWID PAKLVGYKLT PTDVYNAIRN QNALVSAGTL GDLPSTSDQP IAATVVVEGQ
MTTTEQFGNI VLVSKPDGSQ VRIKDVARLE LGGQTYATSA RINGQPISAI GVQLSPTGNA
LGTAKAVKAK LDELSKYFPA GVEYKIPYDT SKFVQISIEE VVKTLFEAMA LVFLVMLVFL
QNIRYTLIPS IVVPISLLGA FATMNALGFS INVLTMFGLV LAIGILVDDA IVVVENVERI
MSQEGLPPRE ATRKAMGQIT GAIIGITLVL MAVFIPMAFF SGSVGAIYRQ FSLSMVASIF
FSALMALTLT PALCSTLLKP IEKGSHHEKK GFFGWFNRMF TSTTDRYQSL VERVLKKTFR
YMVIYGALIA AVVFLFMRLP SSFLPNEDQG YIITNIQLPP AASANRTLEV IKHVENYYQH
EKAVENIVAV QGFSFSGNGP NAALVFTTLK DWSSRGADQS ADAVAGRAFG ALFGGIRDAI
VFPLNPPPIP ELGNATGFTF RLQDRGGLGH DALMAARNQL LGMAGQSKVL KNVRPDGLED
SPQYQVDIDR EKANALGVAF ADINNVLSTA LGSAYANDFP NYGRQQRVIV QADRINRMQP
EDIMNLYVRN TQGSMVPMSA FAKGHWVVGP VQLVRYNGYP SVRISGDAAT GASTGDAMDE
MEHLASRLPA GIGFEWTGQS LQEKSSGSQA PALYALSLLA VFLVLAALYE SWSIPAAVIL
VVPLGVLGAL LGVTLRFMPD DVYFKVGLIA VVGLSAKNAI LIIEFAKDLQ AQGKGLIEAT
LEAVHLRFRP IIMTSFAFIL GVLPLAIATG ASSASQRAIG TGVMGGMITA TVLAVVLVPV
FFVVVRRIFK GSERQRRLDA AHLPLDEEI