Gene WD0004 details

Gene Information

• Locus tag: WD0004
• ID: 2738286
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Wolbachia endosymbiont of Drosophila melanogaster
• Kingdom: Bacteria
• Replicon accession: NC_002978
• Strand: +
• Start bp: 4300
• End bp: 4980
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 637172243
• Product: type IV secretion system protein VirB8
• Protein accession: NP_965838
• Protein GI: 42519923
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3736] Type IV secretory pathway, component VirB8

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.2066
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTAAGAT TTTTTAAGCG AGAAAAAAAT ACTGAATCCT TAGATAAGGA TATAAATTGG 
AATTCAAACC GCTACAGCAC AGTTATTGCT CAAAGGAATA TTCTACTTTT ATTTGCATTA 
ATATTATTAG CAACGATCTC TATCAGCATA TTAGTCATAT TTAAAATTAG CACAAGTAGC 
ACTATTGAGC CATTTGTTAT AGAAATTGAC AAGAAATCAG GAATAGTGCA ATTGGTTGAT 
CCTGTCACAG TAAAACAGTA TTCTGCAGAT GAAGCGCTAA ACGATTATTT TATTTCAGAG 
TATATAAAAG CAAGGGAGGT TTTTGATCCA TATCATTATA ATTATAACTA TTATACAAAG 
GTGAGGTTGT TTTCCTCACC TGATGTGTAT AATGAATTTA GAAATTATGT AGGATCGCAG 
AATATGGATG ATCTTTTTAA TTTATATTCA GATACCAAAA GTGAATTTAA AATTCGCTCA 
ATTCAAAAGT TGGGTAACGA TGCTCTTCAG GTGAGATTTT TTGTGGAATT TACACGGAAA 
GATGGAAGTT CTACGAGAAA AAATAAGATA GTTATTATGT CATATAGATA TGCATCGCTT 
GAAATGGATA ATCAGCAAAG ATATATTAAC CCATTAGGAT TTCAAGTTAT TTCATATAGA 
GTAGATGATG AATATGTATA G 

 

Protein sequence

MLRFFKREKN TESLDKDINW NSNRYSTVIA QRNILLLFAL ILLATISISI LVIFKISTSS 
TIEPFVIEID KKSGIVQLVD PVTVKQYSAD EALNDYFISE YIKAREVFDP YHYNYNYYTK 
VRLFSSPDVY NEFRNYVGSQ NMDDLFNLYS DTKSEFKIRS IQKLGNDALQ VRFFVEFTRK 
DGSSTRKNKI VIMSYRYASL EMDNQQRYIN PLGFQVISYR VDDEYV