| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA2839 |
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| Symbol | topA |
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| ID | 3104042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | - |
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| Start bp | 3029974 |
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| End bp | 3032280 |
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| Gene Length | 2307 bp |
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| Protein Length | 768 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637171968 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_115233 |
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| Protein GI | 53803091 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCAGC ATCTCGTCAT CGTCGAATCG CCGGCCAAGG CCCGGACGAT CGAAAAATAT
CTCGGCAAGT CTTTCCAGGT CTATGCCTCC TACGGGCATG TGAGGGACTT GATTCCCAAG
GAAGGCGCGG TCGACCCCGA CCACGACTTT TCGATGAAGT ACGCAATCAT CGAGAAGAAC
AAGAAACACG TGCAGGCGAT TTCCAAGGCC ATGGAAAAAG CCGATGCGCT GTATCTCGCG
ACCGACCCCG ACCGCGAGGG CGAGGCGATT TCCTGGCATC TCTATGAATT GCTGAAGGAA
CAGCAGGTTC TCGACAGCAA GCCGGTCCAT CGCGTGGTGT TCCACGAAAT CACCAAGCGC
GCCATCACCG AAGCCGTCGA AAACCCCAAA ACGCTTTCGA CCGATCTCAT CCACGCCCAG
CAGGCCCGGC GGGCGCTCGA TTACCTGGTC GGTTTCAAGC TTTCACCGCT GTTGTGGAAG
AAGATCCGGC GCGGATTGTC TGCGGGGCGC GTGCAAAGCC CGGCGTTGCG GATGATCGTG
GAGCGCGAAC TCGAAATCGA GCGCTTCGAG GTCCAGGAGT ACTGGACCAT CGAGGCGGCG
ATCCAGACCG AAGACCAGGC ACTTTCGGCC CGACTGACCC ATCTGGCCGG CGAGAAGCTG
GAGCAGTTCA GCATCGTCAA CGAGGCGCAG GCGCAGGCCA CGCGGCAGAG TCTGCTGGAC
CAGGCCCGCG GCAAATTGCA GGTGGTCCGG GTCGAGGAGA GGGAACGCAA GCGCAATCCT
GCCGCGCCTT TCACGACCTC GACCCTGCAG CAGGAAGCGG CCAGGAAGCT CGGCTTCACC
ACCCGCCGGA CCATGACCGT GGCCCAGCAG CTTTATGAGG GTATCGACCT GGGCGGCGAG
GCGGTGGGGC TCATCACCTA CATGCGTACC GATTCGGTCA ATCTCGCTCA GGAGGCCGTC
CAGGAATTGC GCGCGCTGAT CGAGTCGCGC TATGGCAAGG ACAATTTGCC CGCGCAGCCG
CGGCTTTACA AAACCAAGAG CAAAAATGCC CAGGAAGCAC ACGAGGCGAT CCGTCCGACT
TCGGCGTTCC GGACGCCGGA GTCGGTCAAG GCGCATCTGA CGCCGGATCA GTTCAAGCTC
TACAGCCTGA TCTGGAAGCG CAGCGTGGCC TGTCAGATGG TCCATGCCAC CTTGAACACC
GTCACCGTGG ACTTCGCCTG CGGCAGCGCC GACAACCTGT TCCGCGCCAC CGGTTCGACG
GTGATCCATC CGGGCTTCAT GTCGGTGTAC CGGGAAGGAC GGGACGACAT GCCGGAGGAA
AGCGACGAAA TCTATCTGCC CAAGCTGGTG GAAGGGCAGG AAGTCGACCT GAAGGACGTG
ACTCCTTCGC AGCATTTCAC CGAGCCGCCG CCCCGCTACA CCGAGGCCAG TCTGGTCAAG
GCGCTGGAGG AATACGGCAT CGGCCGGCCG TCGACCTACG CGACCATCAT TTCGACGCTG
CAGCAGCGGC ATTACGTCGA GCTGGAAAAC AAACGCTTCC GTCCCACCGA TCTGGGGCGG
GTGGTGAACA AGTTCCTGAC GGAGCATTTC AACCGCTACG TGGACTACAA CTTCACCGCC
AACCTCGAAG ACGACCTGGA TGCGGTGTCG CGGGGTGAGA AGGACTGGAT TCCGCTGATG
CGGGAATTCT GGGGACCCTT CCATGCCCTG ATCGGCGAGA AGGATGAAAG CCTGAAACGG
GCCGACGTGA CGCACGAGGC GATCGACGAG AAATGCCCGG AATGCGGAAG CCCGCTTTCG
ATCCGGCTGG GGCGCAACGG CCGGTTCGTC GGCTGCACCA ACTATCCGCA ATGCAAATAC
ACGCGGAATC TGGCCGGCAA AGAGTCGGAG CAAACCGAGC CCGAGGTCGT GGAGGGAAGG
CAGTGTCCCA AATGCCATTC GCCGCTCGTC ATCAAGACCG GGCGCTATGG CCGCTTCATC
GGCTGCAGCG GCTACCCCGC CTGCCGCCAC ATCGAACCGC TGGAGAAACC CACCGACACC
GGCGTGCCCT GCCCCGAATG CGGACAGGGG ACCCTGACCA AGCGCAAGTC CCGCTTCGGC
AAGCTGTTTT ACTCCTGTTC GACTTATCCC AAATGCAGCT ATGCGGTGTG GAATCCGCCG
ATCGCCGAGG CCTGCCCCGC CTGTCAGTGG CCCGTGCTCA CACTGAAGAC CACCAAGCGC
CGCGGCACCG AGAAAGTCTG CCCGCGCAAG GAGTGCGGTT ATGCGGCGCC CTACGAGGGT
GAGCCGTTGA CCGATTTCGC TGCCTGA
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| Protein sequence | MAQHLVIVES PAKARTIEKY LGKSFQVYAS YGHVRDLIPK EGAVDPDHDF SMKYAIIEKN
KKHVQAISKA MEKADALYLA TDPDREGEAI SWHLYELLKE QQVLDSKPVH RVVFHEITKR
AITEAVENPK TLSTDLIHAQ QARRALDYLV GFKLSPLLWK KIRRGLSAGR VQSPALRMIV
ERELEIERFE VQEYWTIEAA IQTEDQALSA RLTHLAGEKL EQFSIVNEAQ AQATRQSLLD
QARGKLQVVR VEERERKRNP AAPFTTSTLQ QEAARKLGFT TRRTMTVAQQ LYEGIDLGGE
AVGLITYMRT DSVNLAQEAV QELRALIESR YGKDNLPAQP RLYKTKSKNA QEAHEAIRPT
SAFRTPESVK AHLTPDQFKL YSLIWKRSVA CQMVHATLNT VTVDFACGSA DNLFRATGST
VIHPGFMSVY REGRDDMPEE SDEIYLPKLV EGQEVDLKDV TPSQHFTEPP PRYTEASLVK
ALEEYGIGRP STYATIISTL QQRHYVELEN KRFRPTDLGR VVNKFLTEHF NRYVDYNFTA
NLEDDLDAVS RGEKDWIPLM REFWGPFHAL IGEKDESLKR ADVTHEAIDE KCPECGSPLS
IRLGRNGRFV GCTNYPQCKY TRNLAGKESE QTEPEVVEGR QCPKCHSPLV IKTGRYGRFI
GCSGYPACRH IEPLEKPTDT GVPCPECGQG TLTKRKSRFG KLFYSCSTYP KCSYAVWNPP
IAEACPACQW PVLTLKTTKR RGTEKVCPRK ECGYAAPYEG EPLTDFAA
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