| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA2816 |
|---|
| Symbol | |
|---|
| ID | 3103810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | + |
|---|
| Start bp | 3008109 |
|---|
| End bp | 3009557 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637171946 |
|---|
| Product | outer membrane efflux family protein |
|---|
| Protein accession | YP_115211 |
|---|
| Protein GI | 53802997 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.719657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACCGT TCCGTCAGGC ATTGGCCGGT ACGCTGGCCG CAACTCTCCT GTGCGGCTGC
ACGCCGACCC GGGTCGCTCT CCCGCCGGCG CCGGCGGCCC CCGAAAACTG GGCTCAGGCG
CCCCAGACGC CGGTATCGGC CCCCGCCATC CTGAAGCAGT GGTGGCGGAA ATTCGATGAT
CCGGTTCTGG ACGACCTGAT CGACCGTGCG CTGGCCGCCA ACCCGGACCT CCGGAGTGCC
CAGGCGAGGG TCCGGGAAGC CGCGGCCACG GTCGTCGTCG CCGAATCCGC ACTTTATCCC
AGCCTCGATT TCTTCGGCTC GGGCGGACGT GAAAAGCGGA TCGACCGCAT CATCGCCGTG
CCGGGAAAAC AGGGCTATCA GCTGATCACC CCCACCGCCG ACATGGTGAC CGGCGGACTC
TCTGCGCGCT GGGAGCTGGA CATCTTCGGC CAGCGTCACC TGGAAGCGGA AGCGGCGGCG
GCCCAGGCGC TGGGCGTGGA AGAAACGCTG CATGCGGCTC AGGTCGGCCT GCTGGCGCAA
GTGGCCACGA ATTACCTGGA ACTGCGCGGC GTGCAGCGGC AGACGGCCCT GTTCGAAGAC
AATCTCGAGG TGCAGCGCGA GCGGCTGAAA ACCTTGAAGG CCTTCTACCG CGCCGGTCTC
GCCGAGGAAG CCGCCGTCGC CGGACAGGAA GCACTGTTAC AAAGCGCGGA AGCGGCCCTG
CCGGCACTGA ACGAAACCGC CATCCGCCTG ATCCAGCGCC TGAGCGTGCT GACCGGTCAG
CCGCCGCAGA CGCTGCAGGC CCGCCTGGCC GAACCCCGGC CGTTGCCGGC ATCGACCCCC
ATCATCCCCA AGCTGTTGCC GTCCAGCCTG CTCGCGCAAC GCCCCGACCT TCGCCAGGCC
CAGGCCGAAG TCATCGCCGC GGCGGCCGGC CTGGGGGCGG CCCGTGCGGA CTTGCTGCCG
AAACTGGTGC TCTCGGCCAG CGGCGGCTTC GGGGCCCTGG CGGTCGGCGG GTTCCCCAGC
CTGAGCGAAA GCGTCTACGC CCTCGGCGCG GGCCTCACTG CACCGATTTT CAACGCAGGA
CGCATCCGCG CCCAGATCGC CGCCGCCGAC GCAAGGCTCG ACCAGGTGGC CGCGAATTAC
GAAAAGACCT TTCTGCAGGC GCTGGAAGAC GTGGAAAACG CCTTCCTCGC CCACCGGACG
GCGAACCAGC GCTGCCTCCA TCTGGCGGAC GCGGAAGCCG CCGCGGAACA TGCCCGGCAC
TCGACCGAAG CGCTGTATCG GCGGGGAGCG GCGAATTACC TTGCGGTGCT GGACTCGAAA
GCTTCGAAAC TGTCCGTCCT GGGCGAAGCC GTCAAAGCCC GGACCACCGC GCTGGTCGCA
CTGGTGTCGT TATACCGGGC GTTCGGCGGC GGCTGGCTGG AGGAACCGGT CGCCGTCGAA
ACGGACTGA
|
|---|
| Protein sequence | MRPFRQALAG TLAATLLCGC TPTRVALPPA PAAPENWAQA PQTPVSAPAI LKQWWRKFDD
PVLDDLIDRA LAANPDLRSA QARVREAAAT VVVAESALYP SLDFFGSGGR EKRIDRIIAV
PGKQGYQLIT PTADMVTGGL SARWELDIFG QRHLEAEAAA AQALGVEETL HAAQVGLLAQ
VATNYLELRG VQRQTALFED NLEVQRERLK TLKAFYRAGL AEEAAVAGQE ALLQSAEAAL
PALNETAIRL IQRLSVLTGQ PPQTLQARLA EPRPLPASTP IIPKLLPSSL LAQRPDLRQA
QAEVIAAAAG LGAARADLLP KLVLSASGGF GALAVGGFPS LSESVYALGA GLTAPIFNAG
RIRAQIAAAD ARLDQVAANY EKTFLQALED VENAFLAHRT ANQRCLHLAD AEAAAEHARH
STEALYRRGA ANYLAVLDSK ASKLSVLGEA VKARTTALVA LVSLYRAFGG GWLEEPVAVE
TD
|
|---|
| |